FFCP PHASE1:Mm9::chr6:86145421..86145433,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=21802|HGNC=|MCL_coexpression_id=3579|UniProt=P48030|association_with_transcript=1bp_to_ENSMUST00000032066_5end|description=CAGE_peak_4_at_Tgfa_5end|id=chr6:86145421..86145433,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.03e-09!52;UBERON:0005068!1.03e-09!52;UBERON:0006241!1.03e-09!52;UBERON:0007135!1.03e-09!52;UBERON:0000955!2.13e-08!50;UBERON:0006238!2.13e-08!50;UBERON:0001017!4.94e-08!73;UBERON:0005743!4.94e-08!73;UBERON:0004121!5.59e-08!102;UBERON:0000924!5.59e-08!102;UBERON:0006601!5.59e-08!102;UBERON:0002616!6.95e-08!49;UBERON:0000073!8.13e-08!75;UBERON:0001016!8.13e-08!75|ontology_enrichment_uberon_v019_2=UBERON:0002240,2.80e-10,6;UBERON:0005174,2.80e-10,6;UBERON:0001137,2.80e-10,6;UBERON:0003076,7.09e-10,12;UBERON:0003057,7.09e-10,12;UBERON:0004121,2.72e-09,95;UBERON:0000924,2.72e-09,95;UBERON:0006601,2.72e-09,95;UBERON:0001948,1.06e-08,5;UBERON:0002315,1.06e-08,5;UBERON:0000014,1.97e-08,5;UBERON:0001003,1.97e-08,5;UBERON:0002097,1.97e-08,5;UBERON:0002199,1.97e-08,5;UBERON:0007029,1.97e-08,5;UBERON:0007376,1.97e-08,5;UBERON:0002416,1.97e-08,5;UBERON:0007383,1.97e-08,5;UBERON:0000073,8.76e-08,54;UBERON:0010371,1.34e-07,73;UBERON:0007023,1.42e-07,51;UBERON:0001049,1.65e-07,52;UBERON:0005068,1.65e-07,52;UBERON:0006241,1.65e-07,52;UBERON:0007135,1.65e-07,52;UBERON:0001017,2.85e-07,73;UBERON:0001016,6.51e-07,75|phase1_expression=0.160148847104794,0.697950815278722,0,0.30246421130683,0,0.671517087647559,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0.22940928106717,2.29692785646008,0.430761996159075,0.430942465371778,0.570070258369122,0.504060259519861,0.221730510655305,0,0,0,0,0.498703936075477,0,0,0,0,0,0,0,0.251793635951155,0.506884656097573,0.917733760808408,0,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0,0,0,0.257259436035947,0.286533439938757,0.515672092277442,0.809265843438391,1.05798195854407,0.633831403506179,0.338844532069132,0,0,0,0,1.19840044207362,0.768436610643109,0.103689612308478,0.540023753326763,0,2.57085885963423,2.42955395046775,0.367472397644862,0.575072826109418,0.919218786610021,2.20231761998777,1.0214987046815,0.921639199537461,0.527545150920775,1.28082701043374,0.52091337055676,0.837548997004143,0.56276261003168,1.06958773443767,2.35702868378934,1.70846016958924,1.67759501242771,0.227178579999552,0.226714680320357,0.579728977403356,0,0,0,0,0.448026887097336,0.842666520790511,0,0,0,0.422530259330042,0,0,0,1.29894624606728,1.26679932737549,0.505524445014783,0.22836775943812,2.07150306917737,0.890652834388949,0.173485326766136,0,0.691846491768175,0.150722640552623,0.23517741427141,0.502666365318702,7.16865406429684,0.722996784599558,0,0.485300549842228,0.220841518460394,0.484875253135222,0,0.292780797011547,1.04723353406728,0.255457055208591,0,0,0,0.599162557619291,9.60751265919116,4.77486538028885,1.56441888173049,1.27857728665165,1.45451631191692,2.27137768294861,0.305518091550949,0.373220911830279,0.758168275301024,0,0.130120442962704,0,0.180062129805349,0,0.0680364991513279,0.12811372028485,0.187403449119458,0.517406741478031,0,0.189106080167819,0,0,0.278047249225598,1.0447564995665,1.4404749548556,0.199034266818493,0,0,0,0.207125772535502,0,0,0,0.196764231747404,0,0,0.268273401399619,0.467061369468678,0,0,0.0810688095458557,0,0,0,2.52347938276953,0.92614151141356,0.660837565967596,0.264450566663544,0,0,0.38660238396628,0.605050573870028,0.22237804384487,0.760902504450237,0,1.64698954724011,1.25667604400135,0.596869416123452,0.58489226135736,0,0.432276099749388,0.597423819763102,0.758671603812327,0.228497025219458,0,0.203651327845314,0.387904974335251,0.701358198903186,0.316182685621286,0.295220295959204,0.470996183524124,0.616985819609003,0.592905254174298,0,0.196558995113203,0,0.405720242777006,0.241177159752417,0,0.575392274901621,0.648540907100142,0.274561413188081,0,0.372140947668503,0.936113019343682,1.01031551178845,0.179397413521912,0,1.10851914099963,0,0.325929952884052,0,0,0,0.476087281772027,0.975668239288994,0.472905432318573,0.221464689648775,0.159454768657487,0.81931657357869,0.172684981865896,0.289298117163023,0,0,0,0,1.76605648986571,2.22702204525186,0,0,0,0,0.215423397732799,0,0,0.283076530788832,0,0,0,2.89189184779626,1.41940085208269,0.534196811001766,0.488660878060728,1.15479086080775,0,0,0.302323556964751,0.188605079755898,0,0.614870295887855,1.55056975900933,0.727067458955011,2.49548164869305,1.58018378967908,0,2.06271086496374,0,0.720244376125241,0.905510786479282,1.92903331528433,0.532020700926821,0.535106452806212,0.822745103010605,1.522324745573,0.469343416127421,1.48282449604674,0.882113592219848,1.97863503529776,1.77610869365496,1.14594557363496,3.46179797609096,3.77524069413641,0.874442509889552,2.78137953015765,0,0.82554747185289,0.185194527369712,0,0,0.228778173206523,0,0,0,4.77335309007557,0.158167996790568,0.203319467126849,0.432021363287205,0.209088296014469,0.655087691238533,1.07891477107857,1.48776220305605,1.30877970992015,1.68499465279331,0.621339313086926,1.69107881605257,0.149516546043979,0.165458490457098,0.388902376688095,0.774958940866387,0.337912250981556,0.58678619322877,1.0416350787516,0.209718688851422,0.966336483304024,1.15212002503146,0,0,0.102710957164827,0,0,0,0,0.147689527174577,0,0,0,0.0974578807397524,0,0,1.81384306892169,0,0.0897138566094757,0,2.12508553435409,0.375364950902364,0.549454872801795,1.07184189539533,1.00314420807073,0.564751842617067,0.920650473014354,0.572895513439397,0.68741272937475,1.37016503954128,0,0.675022500231806,0.45032120322422,0.906284817968409,0,0.103787347584177,0,0.853668028770671,0.486213434136588,0.419226325255965,0.183843508450014,0.44449345560323,0.412070114477788,0,0.252697211763798,0,0.565879024158229,0.749132059759059,0.192075457214608,0.516919220600519,0.952587382566147,0.579421629724277,0.964546102318525,0.412085900803307,0.294397840268795,0.342869252385415,0.532427418478012,0.238436189947321,0.436039249896986,0.470546902076653,0.338458431566706,0,0.789209134313529,0.407412341537585,0,0.593175090620871,0.788035859004508,0,0.309873682371932,0.192906610981141,0.249810577937946,0.935726433781634,0.429742108096597,0.57386499620653,0.441182838239031,0|short_description=p4@Tgfa}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:21802 | |||
|HGNC= | |||
|MCL_coexpression_id=3579 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P48030 | |||
|association_with_transcript=1bp_to_ENSMUST00000032066_5end | |||
|cluster_id=chr6:86145421..86145433,+ | |||
|description=CAGE_peak_4_at_Tgfa_5end | |||
|id=chr6:86145421..86145433,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.03e-09!52;UBERON:0005068!1.03e-09!52;UBERON:0006241!1.03e-09!52;UBERON:0007135!1.03e-09!52;UBERON:0000955!2.13e-08!50;UBERON:0006238!2.13e-08!50;UBERON:0001017!4.94e-08!73;UBERON:0005743!4.94e-08!73;UBERON:0004121!5.59e-08!102;UBERON:0000924!5.59e-08!102;UBERON:0006601!5.59e-08!102;UBERON:0002616!6.95e-08!49;UBERON:0000073!8.13e-08!75;UBERON:0001016!8.13e-08!75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,2.80e-10,6;UBERON:0005174,2.80e-10,6;UBERON:0001137,2.80e-10,6;UBERON:0003076,7.09e-10,12;UBERON:0003057,7.09e-10,12;UBERON:0004121,2.72e-09,95;UBERON:0000924,2.72e-09,95;UBERON:0006601,2.72e-09,95;UBERON:0001948,1.06e-08,5;UBERON:0002315,1.06e-08,5;UBERON:0000014,1.97e-08,5;UBERON:0001003,1.97e-08,5;UBERON:0002097,1.97e-08,5;UBERON:0002199,1.97e-08,5;UBERON:0007029,1.97e-08,5;UBERON:0007376,1.97e-08,5;UBERON:0002416,1.97e-08,5;UBERON:0007383,1.97e-08,5;UBERON:0000073,8.76e-08,54;UBERON:0010371,1.34e-07,73;UBERON:0007023,1.42e-07,51;UBERON:0001049,1.65e-07,52;UBERON:0005068,1.65e-07,52;UBERON:0006241,1.65e-07,52;UBERON:0007135,1.65e-07,52;UBERON:0001017,2.85e-07,73;UBERON:0001016,6.51e-07,75 | |||
|phase1_expression=0.160148847104794,0.697950815278722,0,0.30246421130683,0,0.671517087647559,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0.22940928106717,2.29692785646008,0.430761996159075,0.430942465371778,0.570070258369122,0.504060259519861,0.221730510655305,0,0,0,0,0.498703936075477,0,0,0,0,0,0,0,0.251793635951155,0.506884656097573,0.917733760808408,0,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0,0,0,0.257259436035947,0.286533439938757,0.515672092277442,0.809265843438391,1.05798195854407,0.633831403506179,0.338844532069132,0,0,0,0,1.19840044207362,0.768436610643109,0.103689612308478,0.540023753326763,0,2.57085885963423,2.42955395046775,0.367472397644862,0.575072826109418,0.919218786610021,2.20231761998777,1.0214987046815,0.921639199537461,0.527545150920775,1.28082701043374,0.52091337055676,0.837548997004143,0.56276261003168,1.06958773443767,2.35702868378934,1.70846016958924,1.67759501242771,0.227178579999552,0.226714680320357,0.579728977403356,0,0,0,0,0.448026887097336,0.842666520790511,0,0,0,0.422530259330042,0,0,0,1.29894624606728,1.26679932737549,0.505524445014783,0.22836775943812,2.07150306917737,0.890652834388949,0.173485326766136,0,0.691846491768175,0.150722640552623,0.23517741427141,0.502666365318702,7.16865406429684,0.722996784599558,0,0.485300549842228,0.220841518460394,0.484875253135222,0,0.292780797011547,1.04723353406728,0.255457055208591,0,0,0,0.599162557619291,9.60751265919116,4.77486538028885,1.56441888173049,1.27857728665165,1.45451631191692,2.27137768294861,0.305518091550949,0.373220911830279,0.758168275301024,0,0.130120442962704,0,0.180062129805349,0,0.0680364991513279,0.12811372028485,0.187403449119458,0.517406741478031,0,0.189106080167819,0,0,0.278047249225598,1.0447564995665,1.4404749548556,0.199034266818493,0,0,0,0.207125772535502,0,0,0,0.196764231747404,0,0,0.268273401399619,0.467061369468678,0,0,0.0810688095458557,0,0,0,2.52347938276953,0.92614151141356,0.660837565967596,0.264450566663544,0,0,0.38660238396628,0.605050573870028,0.22237804384487,0.760902504450237,0,1.64698954724011,1.25667604400135,0.596869416123452,0.58489226135736,0,0.432276099749388,0.597423819763102,0.758671603812327,0.228497025219458,0,0.203651327845314,0.387904974335251,0.701358198903186,0.316182685621286,0.295220295959204,0.470996183524124,0.616985819609003,0.592905254174298,0,0.196558995113203,0,0.405720242777006,0.241177159752417,0,0.575392274901621,0.648540907100142,0.274561413188081,0,0.372140947668503,0.936113019343682,1.01031551178845,0.179397413521912,0,1.10851914099963,0,0.325929952884052,0,0,0,0.476087281772027,0.975668239288994,0.472905432318573,0.221464689648775,0.159454768657487,0.81931657357869,0.172684981865896,0.289298117163023,0,0,0,0,1.76605648986571,2.22702204525186,0,0,0,0,0.215423397732799,0,0,0.283076530788832,0,0,0,2.89189184779626,1.41940085208269,0.534196811001766,0.488660878060728,1.15479086080775,0,0,0.302323556964751,0.188605079755898,0,0.614870295887855,1.55056975900933,0.727067458955011,2.49548164869305,1.58018378967908,0,2.06271086496374,0,0.720244376125241,0.905510786479282,1.92903331528433,0.532020700926821,0.535106452806212,0.822745103010605,1.522324745573,0.469343416127421,1.48282449604674,0.882113592219848,1.97863503529776,1.77610869365496,1.14594557363496,3.46179797609096,3.77524069413641,0.874442509889552,2.78137953015765,0,0.82554747185289,0.185194527369712,0,0,0.228778173206523,0,0,0,4.77335309007557,0.158167996790568,0.203319467126849,0.432021363287205,0.209088296014469,0.655087691238533,1.07891477107857,1.48776220305605,1.30877970992015,1.68499465279331,0.621339313086926,1.69107881605257,0.149516546043979,0.165458490457098,0.388902376688095,0.774958940866387,0.337912250981556,0.58678619322877,1.0416350787516,0.209718688851422,0.966336483304024,1.15212002503146,0,0,0.102710957164827,0,0,0,0,0.147689527174577,0,0,0,0.0974578807397524,0,0,1.81384306892169,0,0.0897138566094757,0,2.12508553435409,0.375364950902364,0.549454872801795,1.07184189539533,1.00314420807073,0.564751842617067,0.920650473014354,0.572895513439397,0.68741272937475,1.37016503954128,0,0.675022500231806,0.45032120322422,0.906284817968409,0,0.103787347584177,0,0.853668028770671,0.486213434136588,0.419226325255965,0.183843508450014,0.44449345560323,0.412070114477788,0,0.252697211763798,0,0.565879024158229,0.749132059759059,0.192075457214608,0.516919220600519,0.952587382566147,0.579421629724277,0.964546102318525,0.412085900803307,0.294397840268795,0.342869252385415,0.532427418478012,0.238436189947321,0.436039249896986,0.470546902076653,0.338458431566706,0,0.789209134313529,0.407412341537585,0,0.593175090620871,0.788035859004508,0,0.309873682371932,0.192906610981141,0.249810577937946,0.935726433781634,0.429742108096597,0.57386499620653,0.441182838239031,0 | |||
|short_description=p4@Tgfa | |||
}} |
Revision as of 05:38, 6 August 2015
Short description: | p4@Tgfa |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Tgfa_5end |
Coexpression cluster: | MCL_coexpression_mm9:3579 |
Association with transcript: | 1bp_to_ENSMUST00000032066_5end |
EntrezGene: | 21802 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
spinal cord | 2.80e-10 | 6 |
dorsal region element | 2.80e-10 | 6 |
dorsum | 2.80e-10 | 6 |
posterior neural tube | 7.09e-10 | 12 |
chordal neural plate | 7.09e-10 | 12 |
ectoderm-derived structure | 2.72e-09 | 95 |
ectoderm | 2.72e-09 | 95 |
presumptive ectoderm | 2.72e-09 | 95 |
regional part of spinal cord | 1.06e-08 | 5 |
gray matter of spinal cord | 1.06e-08 | 5 |
zone of skin | 1.97e-08 | 5 |
skin epidermis | 1.97e-08 | 5 |
skin of body | 1.97e-08 | 5 |
integument | 1.97e-08 | 5 |
surface | 1.97e-08 | 5 |
outer epithelium | 1.97e-08 | 5 |
integumental system | 1.97e-08 | 5 |
enveloping layer of ectoderm | 1.97e-08 | 5 |
regional part of nervous system | 8.76e-08 | 54 |
ecto-epithelium | 1.34e-07 | 73 |
adult organism | 1.42e-07 | 51 |
neural tube | 1.65e-07 | 52 |
neural rod | 1.65e-07 | 52 |
future spinal cord | 1.65e-07 | 52 |
neural keel | 1.65e-07 | 52 |
central nervous system | 2.85e-07 | 73 |
nervous system | 6.51e-07 | 75 |