FFCP PHASE1:Hg19::chr7:128002026..128002047,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401399 | |EntrezGene=401399 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=37280 | |HGNC=37280 | ||
|TSSclassifier=strong | |||
|UniProt=C9JH25,C9JWH6 | |UniProt=C9JH25,C9JWH6 | ||
|association_with_transcript=-287bp_to_ENST00000435512,ENST00000446477,ENST00000495931,ENST00000535159,NM_001114726,NM_001174164,uc010llh.2_5end | |association_with_transcript=-287bp_to_ENST00000435512,ENST00000446477,ENST00000495931,ENST00000535159,NM_001114726,NM_001174164,uc010llh.2_5end | ||
|cluster_id=chr7:128002026..128002047,- | |||
|description=CAGE_peak_3_at_PRRT4_5end | |description=CAGE_peak_3_at_PRRT4_5end | ||
|id=chr7:128002026..128002047,- | |id=chr7:128002026..128002047,- | ||
|ontology_enrichment_celltype=CL:0000333;1.31e-16;5!CL:0002032;1.65e-10;1!CL:0000557;1.65e-10;1!CL:0000817;6.91e-10;1 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0000333;1.31e-16;5!CL:0002032;1.65e-10;1!CL:0000557;1.65e-10;1!CL:0000817;6.91e-10;1 | ||
|ontology_enrichment_disease=DOID:171;2.30e-31;10!DOID:3095;4.80e-14;22!DOID:2994;4.80e-14;22!DOID:169;6.13e-14;6!DOID:1240;1.43e-12;39!DOID:225;6.91e-10;1!DOID:8692;1.10e-09;31!DOID:2531;1.80e-08;51!DOID:0060083;1.80e-08;51 | |ontology_enrichment_celltype_v019_2= | ||
|ontology_enrichment_uberon=UBERON:0002346;1.95e-20;4!UBERON:0000923;1.95e-20;4!UBERON:0010316;1.95e-20;4!UBERON:0005291;1.95e-20;4!UBERON:0000013;1.31e-16;5!UBERON:0002410;1.31e-16;5!UBERON:0002050;1.79e-16;5!UBERON:0005423;1.79e-16;5!UBERON:0001874;6.91e-10;1!UBERON:0000010;1.82e-09;8 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:171!2.65e-11!10 | |||
|ontology_enrichment_disease_v019=DOID:171;2.30e-31;10!DOID:3095;4.80e-14;22!DOID:2994;4.80e-14;22!DOID:169;6.13e-14;6!DOID:1240;1.43e-12;39!DOID:225;6.91e-10;1!DOID:8692;1.10e-09;31!DOID:2531;1.80e-08;51!DOID:0060083;1.80e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.56e-31,10;DOID:3095,5.03e-14,22;DOID:2994,5.03e-14,22;DOID:169,7.31e-14,6;DOID:1240,2.99e-13,39;DOID:2531,6.81e-10,51;DOID:0060083,6.81e-10,51;DOID:225,6.91e-10,1;DOID:8692,1.06e-09,31;DOID:162,8.85e-08,235;DOID:14566,1.48e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000924!2.21e-11!173;UBERON:0006601!2.21e-11!173;UBERON:0002346!1.01e-10!90;UBERON:0000073!1.55e-10!94;UBERON:0001016!1.55e-10!94;UBERON:0004121!4.91e-09!169;UBERON:0001017!9.61e-09!82;UBERON:0005743!1.06e-08!86;UBERON:0001049!2.64e-08!57;UBERON:0005068!2.64e-08!57;UBERON:0006241!2.64e-08!57;UBERON:0007135!2.64e-08!57;UBERON:0003075!6.67e-08!86;UBERON:0007284!6.67e-08!86;UBERON:0000369!1.52e-07!4;UBERON:0002435!1.52e-07!4;UBERON:0000204!1.52e-07!4;UBERON:0010082!1.52e-07!4;UBERON:0000955!3.32e-07!69;UBERON:0006238!3.32e-07!69;UBERON:0003076!8.67e-07!15;UBERON:0003057!8.67e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;1.95e-20;4!UBERON:0000923;1.95e-20;4!UBERON:0010316;1.95e-20;4!UBERON:0005291;1.95e-20;4!UBERON:0000013;1.31e-16;5!UBERON:0002410;1.31e-16;5!UBERON:0002050;1.79e-16;5!UBERON:0005423;1.79e-16;5!UBERON:0001874;6.91e-10;1!UBERON:0000010;1.82e-09;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,1.62e-16,5;UBERON:0002410,1.62e-16,5;UBERON:0001874,5.79e-10,1;UBERON:0000010,2.04e-09,8 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0.587200878669695,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201057944823262,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0.190493682876507,0,0,0,0,0.901029173531752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0.0920809889358963,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0,0,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,1.298422916788,0,2.55082036366116,3.39284931435788,0.191505370132367,0,1.94773164164733,0,0,3.76031749855256,0,0,0,0,0,1.37402137902306,0,0,0,1.9538809540204,0,0,0,0,1.4098700508785,0,0,0.121360521749513,0,0,0,0.296964680832639,0,0,0.140669416410513,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,1.99613798001194,0.260427761085233,0,0,0.455173793141999,0,0,0.689486746482929,2.04123229368278,0.694499979733169,0.885741385813839,0.964771509003264,0,0.221158519862449,0.591095237907095,0,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0.468528891450678,0,0,0.242780379534093,0,0,0,0,0,0,0.664653872707185,0,0,1.19472429772959,0,0,0,0.293977192243133,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0.195551382734803,0,0,0,0.288180834308212,0.114536596165916,0,1.00838358591705,0.124252535565433,0,0,0,0,0,0,0,5.10986352267889,0,0.262887354279314,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0.306345576763462,0.327872630709804,0,0,0.244052529803926,0.1251909307065,0,0.110929051536852,0.434674820589684,0.138348634936231,0,0,0.856396000634902,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,1.38699248602383,0,0,0,0.139879507719444,0,0.639471856518258,0,1.25812753484717,4.25917588948854,3.05518553917245,3.61377364172861,1.73510069962603,4.46915934378595,0,0,0,0,0,0.256916900385838,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0.235939446695481,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0,0,0,0,0.703484977438482,0,0,0,0,0,0,0,0,0.611727596791485,0.0657727735628491,0.118193840883968,0.333694205676207,0,1.72827148907602,0,0.913158720509496,0,0,0.142953088353313,0.47404083519818,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,2.58636007709779,0,0,0,0,0.0771741581079447,0,0,0,0,0.392616934229891,0.297046400327086,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0.157771562193185,0,0.436350690340377,0,0,0,0,0,0,0,0.407955318967927,0.26721740526556,0,0,0,0,0,0.103432995861895,0.426467963801962,0,0.0645889098360061,0.186224142887574,0,0.0636471582781649,0,0,0,0.134704106029175,0,0,0.0814032686109745,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0.587200878669695,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201057944823262,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0.190493682876507,0,0,0,0,0.901029173531752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0.0920809889358963,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0,0,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,1.298422916788,0,2.55082036366116,3.39284931435788,0.191505370132367,0,1.94773164164733,0,0,3.76031749855256,0,0,0,0,0,1.37402137902306,0,0,0,1.9538809540204,0,0,0,0,1.4098700508785,0,0,0.121360521749513,0,0,0,0.296964680832639,0,0,0.140669416410513,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,1.99613798001194,0.260427761085233,0,0,0.455173793141999,0,0,0.689486746482929,2.04123229368278,0.694499979733169,0.885741385813839,0.964771509003264,0,0.221158519862449,0.591095237907095,0,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0.468528891450678,0,0,0.242780379534093,0,0,0,0,0,0,0.664653872707185,0,0,1.19472429772959,0,0,0,0.293977192243133,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0.195551382734803,0,0,0,0.288180834308212,0.114536596165916,0,1.00838358591705,0.124252535565433,0,0,0,0,0,0,0,5.10986352267889,0,0.262887354279314,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0.306345576763462,0.327872630709804,0,0,0.244052529803926,0.1251909307065,0,0.110929051536852,0.434674820589684,0.138348634936231,0,0,0.856396000634902,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,1.38699248602383,0,0,0,0.139879507719444,0,0.639471856518258,0,1.25812753484717,4.25917588948854,3.05518553917245,3.61377364172861,1.73510069962603,4.46915934378595,0,0,0,0,0,0.256916900385838,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0.235939446695481,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0,0,0,0,0.703484977438482,0,0,0,0,0,0,0,0,0.611727596791485,0.0657727735628491,0.118193840883968,0.333694205676207,0,1.72827148907602,0,0.913158720509496,0,0,0.142953088353313,0.47404083519818,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,2.58636007709779,0,0,0,0,0.0771741581079447,0,0,0,0,0.392616934229891,0.297046400327086,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0.157771562193185,0,0.436350690340377,0,0,0,0,0,0,0,0.407955318967927,0.26721740526556,0,0,0,0,0,0.103432995861895,0.426467963801962,0,0.0645889098360061,0.186224142887574,0,0.0636471582781649,0,0,0,0.134704106029175,0,0,0.0814032686109745,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p3@PRRT4 | |short_description=p3@PRRT4 | ||
}} | }} |
Latest revision as of 03:21, 16 September 2015
Short description: | p3@PRRT4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PRRT4_5end |
Coexpression cluster: | NA |
Association with transcript: | -287bp_to_ENST00000435512, ENST00000446477, ENST00000495931, ENST00000535159, NM_001114726, NM_001174164, uc010llh.2_5end |
EntrezGene: | PRRT4 |
HGNC: | 37280 |
UniProt: | C9JH25C9JWH6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 1.62e-16 | 5 |
autonomic nervous system | 1.62e-16 | 5 |
putamen | 5.79e-10 | 1 |
peripheral nervous system | 2.04e-09 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.56e-31 | 10 |
germ cell and embryonal cancer | 5.03e-14 | 22 |
germ cell cancer | 5.03e-14 | 22 |
neuroendocrine tumor | 7.31e-14 | 6 |
leukemia | 2.99e-13 | 39 |
hematologic cancer | 6.81e-10 | 51 |
immune system cancer | 6.81e-10 | 51 |
syndrome | 6.91e-10 | 1 |
myeloid leukemia | 1.06e-09 | 31 |
cancer | 8.85e-08 | 235 |
disease of cellular proliferation | 1.48e-07 | 239 |