FFCP PHASE1:Hg19::chr11:119999611..119999625,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23650 | |EntrezGene=23650 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17274 | |HGNC=17274 | ||
|TSSclassifier=strong | |||
|UniProt=E9PRL4 | |UniProt=E9PRL4 | ||
|association_with_transcript=0bp_to_ENST00000529044,ENST00000532195_5end | |association_with_transcript=0bp_to_ENST00000529044,ENST00000532195_5end | ||
|cluster_id=chr11:119999611..119999625,- | |||
|coexpression_cluster_id=C2102 | |||
|description=CAGE_peak_9_at_TRIM29_5end | |description=CAGE_peak_9_at_TRIM29_5end | ||
|id=chr11:119999611..119999625,- | |id=chr11:119999611..119999625,- | ||
|ontology_enrichment_celltype=CL:0002076!1.23e-14!43;CL:0000066!1.90e-14!254;CL:0002251!3.81e-12!21;CL:0000223!1.68e-10!59 | |ontology_enrichment_celltype=CL:0002076!1.23e-14!43;CL:0000066!1.90e-14!254;CL:0002251!3.81e-12!21;CL:0000223!1.68e-10!59 | ||
|ontology_enrichment_celltype_v019=CL:0000349;7.82e-16;19!CL:0000575;3.70e-09;2!CL:0002536;9.13e-09;2!CL:0002537;1.89e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,8.22e-16,19;CL:0000066,2.62e-10,253;CL:0000575,6.43e-09,2;CL:0002536,1.17e-08,2;CL:0002537,1.93e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.37e-15;29 | |||
|ontology_enrichment_disease=DOID:305!8.49e-09!106 | |ontology_enrichment_disease=DOID:305!8.49e-09!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.40e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.61e-14!169;UBERON:0000925!3.61e-14!169;UBERON:0006595!3.61e-14!169;UBERON:0001004!3.74e-13!72;UBERON:0005631!7.14e-12!14;UBERON:0000158!7.14e-12!14;UBERON:0001737!7.57e-12!9;UBERON:0001007!9.09e-10!155;UBERON:0001555!9.09e-10!155;UBERON:0007026!9.09e-10!155;UBERON:0000062!7.75e-09!511;UBERON:0003124!8.66e-09!7;UBERON:0000077!9.56e-09!130;UBERON:0000161!1.87e-08!35;UBERON:0001557!2.18e-08!19;UBERON:0004921!2.63e-08!129;UBERON:0004185!2.63e-08!129;UBERON:0000065!2.97e-08!53;UBERON:0000166!1.07e-07!21;UBERON:0000064!1.64e-07!219;UBERON:0008947!8.80e-07!38;UBERON:0003258!8.80e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.41e-28;9!UBERON:0001557;2.41e-28;9!UBERON:0005631;3.29e-19;10!UBERON:0000158;3.29e-19;10!UBERON:0000478;5.28e-15;24!UBERON:0000305;8.42e-15;7!UBERON:0000072;7.31e-10;37!UBERON:0001987;1.24e-09;4!UBERON:0000065;8.63e-09;44!UBERON:0003127;9.13e-09;2!UBERON:0001004;2.65e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.43e-28,9;UBERON:0005631,2.57e-27,14;UBERON:0000158,2.57e-27,14;UBERON:0000478,4.32e-15,24;UBERON:0000305,1.03e-14,7;UBERON:0003124,2.92e-14,7;UBERON:0004871,7.75e-13,8;UBERON:0001557,1.05e-12,19;UBERON:0004119,1.43e-11,160;UBERON:0000925,1.43e-11,160;UBERON:0006595,1.43e-11,160;UBERON:0008947,7.10e-11,38;UBERON:0003258,7.10e-11,38;UBERON:0001987,5.41e-10,4;UBERON:0004340,5.41e-10,4;UBERON:0003127,4.30e-09,2;UBERON:0001007,7.31e-09,145;UBERON:0001555,7.31e-09,145;UBERON:0007026,7.31e-09,145;UBERON:0001004,7.96e-09,74;UBERON:0000072,2.31e-08,47;UBERON:0001041,4.09e-08,87;UBERON:0004921,1.36e-07,118;UBERON:0000065,5.36e-07,54 | |||
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| ||
|short_description=p9@TRIM29 | |short_description=p9@TRIM29 | ||
}} | }} |
Latest revision as of 04:52, 16 September 2015
Short description: | p9@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_TRIM29_5end |
Coexpression cluster: | C2102_amniotic_cervical_Placental_chorionic_Hep2_salivary_Corneal |
Association with transcript: | 0bp_to_ENST00000529044, ENST00000532195_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | E9PRL4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 8.22e-16 | 19 |
epithelial cell | 2.62e-10 | 253 |
corneal epithelial cell | 6.43e-09 | 2 |
amniotic epithelial cell | 1.17e-08 | 2 |
amnion mesenchymal stem cell | 1.93e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.43e-28 | 9 |
extraembryonic membrane | 2.57e-27 | 14 |
membranous layer | 2.57e-27 | 14 |
extraembryonic structure | 4.32e-15 | 24 |
amnion | 1.03e-14 | 7 |
chorion | 2.92e-14 | 7 |
somatic layer of lateral plate mesoderm | 7.75e-13 | 8 |
upper respiratory tract | 1.05e-12 | 19 |
endoderm-derived structure | 1.43e-11 | 160 |
endoderm | 1.43e-11 | 160 |
presumptive endoderm | 1.43e-11 | 160 |
respiratory primordium | 7.10e-11 | 38 |
endoderm of foregut | 7.10e-11 | 38 |
placenta | 5.41e-10 | 4 |
allantois | 5.41e-10 | 4 |
open tracheal system trachea | 4.30e-09 | 2 |
digestive system | 7.31e-09 | 145 |
digestive tract | 7.31e-09 | 145 |
primitive gut | 7.31e-09 | 145 |
respiratory system | 7.96e-09 | 74 |
segment of respiratory tract | 2.31e-08 | 47 |
foregut | 4.09e-08 | 87 |
subdivision of digestive tract | 1.36e-07 | 118 |
respiratory tract | 5.36e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.40e-09 | 106 |