FFCP PHASE1:Hg19::chr20:389045..389056,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:389045..389056,+ to FFCP PHASE1:Hg19::chr20:389045..389056,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10616 | |EntrezGene=10616 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15864 | |HGNC=15864 | ||
|TSSclassifier=strong | |||
|UniProt=A6PVJ5 | |UniProt=A6PVJ5 | ||
|association_with_transcript=58bp_to_ENST00000400247_5end | |||
|cluster_id=chr20:389045..389056,+ | |||
|coexpression_cluster_id=C4033 | |||
|description=CAGE_peak_6_at_RBCK1_5end | |||
|id=chr20:389045..389056,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.37e-13!254;CL:0000223!2.34e-11!59;CL:0002076!2.77e-10!43;CL:0000012!2.42e-07!682;CL:0000220!3.80e-07!246;CL:0002321!4.63e-07!248;CL:0000548!4.83e-07!679;CL:0000004!4.83e-07!679;CL:0000255!4.83e-07!679;CL:0000063!5.65e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0002368;2.96e-11;13!CL:0002178;1.53e-08;3!CL:0002076;2.34e-08;42!CL:0000307;2.74e-08;3!CL:0002202;5.41e-07;9!CL:0002632;5.41e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.01e-17,253;CL:0000223,1.88e-15,58;CL:0002076,1.59e-11,42;CL:0002368,2.16e-11,13;CL:0002178,1.12e-08,3;CL:0000068,2.12e-08,3;CL:0000069,2.12e-08,3;CL:0000307,2.12e-08,3;CL:0000377,2.12e-08,3;CL:0002321,1.40e-07,250;CL:0002202,4.58e-07,9;CL:0002632,4.58e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;6.71e-10;58!CL:0000377;2.74e-08;3!UBERON:0009497;9.66e-07;13 | |||
|ontology_enrichment_disease=DOID:0050687!2.40e-07!143;DOID:305!2.46e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:299;9.87e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.13e-09,106;DOID:0050687,2.77e-07,143;DOID:299,8.66e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.18e-09!169;UBERON:0000925!1.18e-09!169;UBERON:0006595!1.18e-09!169;UBERON:0005911!3.73e-08!82;UBERON:0001007!4.00e-07!155;UBERON:0001555!4.00e-07!155;UBERON:0007026!4.00e-07!155 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,5.47e-09,101;UBERON:0005911,2.10e-07,82;UBERON:0004119,3.93e-07,160;UBERON:0000925,3.93e-07,160;UBERON:0006595,3.93e-07,160 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,2.53299878168311,0,0,0.245733936501509,1.39560233594486,0,0,0,0,0,0,0,0,0.246242116153576,0,0.940364164434263,0,0,0.251085279189606,0.0764134057479513,0.164201178899891,0,0,0,0,0,1.50602959389125,13.3111443660044,0.309868802321207,0.284338464974843,0.293600439334847,0,0,0,0,0,0,0.145398238779565,0,0.242584061187816,0.232429036905685,0,0,1.7261543539329,0.768482119587302,1.41889337933151,0,0,0,0.376484679085209,0,0.449446968890169,0.918251677112708,0,0,1.31940520074686,0.797854630486527,0.852449501065388,1.16083695451434,0.56738522469114,1.24564449799115,0.75374599577023,0.521482918420201,0.868755378820466,0.605399502633369,0,0.316462387440884,0.211255286311942,0,0,0,0,0.16072558669708,0.570025487482497,0,0.182664153764634,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0.164437904603676,0,0,0,0,0,0,0.766440987203842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,6.19301990097322,0.741568885568859,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0.275118041940067,0.417989933073621,0.258416759169329,0.35576626268671,0,0.805658634218294,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0.949265659568129,0,0,0,0.872188104285069,0.496971951695318,0.12663051166458,0.132409180813219,0.860509862246441,0,0,0,0.49333509683432,0,0.134710672069688,0.163461903113459,0.151357427644931,0,0.937285727335186,0.312160076830321,0,0.298897361103602,0,0,0,0,0.122834317311768,0.103325781175765,0,0.494533858557114,0,0,0.168336113954066,0.125118519871964,0,0,0.30648779579902,0.300476117813194,0.113432183160021,0,0.427114777637135,0,0.300091096084402,0.206105058476878,0,0.18611685633159,0.168776332241266,0,0,0.276149695926898,0.161646056818812,0,0,0.339121184620975,1.35282597214308,0.272746120590835,0.860413786167011,0.121973706129595,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,1.77236972004421,0.882926198829301,0.368965315629341,0,1.20725313949488,7.86812272803337,2.11110842064425,0.833296006426766,1.95484983186195,2.07986957055916,0,0,0.234817388471643,0,0,0,0.790204397959275,0,0,0,0.148631162288728,0,0.671928512795438,0.850650583454319,0.447792613514241,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0.07333828582095,0,0,0,0.531876233169741,0,0,0,0,0,0.542621605391443,0,0,0.710783897485092,0.791951872933429,0.301439377059586,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,1.79336230389644,0,0.215627574859517,0,0,0,0,0,0,0,2.99161459204025,0,0,0,0.271265023699736,0,0,0.157702415033935,0.35142424497814,0.902838299183157,0,0,0.664225598535437,0.184369168541703,0.173767228936166,0.783204629850962,1.02943027143257,0,0,0.106727557803444,0.303127571446259,0,0.604780586659361,0.248107807818777,0.153461973288062,0,0,0.511707249066704,0,0,0.154209693802656,0,0.0821271560138091,0.519254429183621,0,0.966875596732978,0.200506470303285,6.16942625870505,0.803701137152247,0.182091168006717,0,2.25599806453706,0.770153371044148,0,0,0,0,0,0,0,0.270946437543853,0.501689773854853,1.01950509218015,1.66215201785745,0.447749509444357,0,0.261435451024901,0,0,0,0,0,0.082509499920588,1.72279661398852,0.650060246036521,1.6068392984416,0.96670718292122,0,0.15350367472613,0.137836572484531,0.107420244868274,0,0.170453254832202,0.534192213880424,1.4875642382488,1.72971060628596,0.255225424989168,2.12431339796655,0.929691098594572,0.31481234683064,0,1.84820148105653,0.532306030317022,0,0.37064843820784,0.715624433709956,0.372158369359667,0.316379424718726,0,0,0.42793898803392,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,2.19342140668156,1.05650146756755,0.136499911407986,0.282810863907425,0,0.551365343546124,0,1.75380354101505,0,0,0.405820753925408,0.30982349809975,0.281695602532241,0,0.0982490410131212,0,0,0,0.329294892959902,0,0,1.82822014178473,1.34060455107157,9.80018863751903,0,3.87454835404107,5.05414427002877,0.886860307073351,0.459446800413919,0,0,0,0.238231775457789,0,0,0,0,0,0.962479855263359,0,0,0.144269212976445,0.213425530045242,0,0.199579371432817,0.383010740264733,0.846694330895531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05854594449042,0,0.242721043499027,0.111443384277478,0,0,0,0,0,0.140669416410513,1.22439575525196,0.329607748453519,0,0.19924798825107,0,0,0,0.246169610922139,0,1.97710372524119,9.30910108313168,0,0,0,0,0,0,0,0,0.0874599999961957,0,0.568967241427498,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0.32681539055697,0.697118721393016,0,0.455768223388005,0,0,0,0.31900115973192,0.183195186803725,0,1.02193298195737,0,0,0,0.19606253431774,0,0,0.158936578980379,3.16497096792041,1.14262965711403,0,0,0,0.0884575645033392,0.611030144933625,0,0.123563938946503,0,0.067401132980677,0,0,0,0.19566461893209,0.242780379534093,0,1.20990716048664,0,0.126373159256976,0.150323419414493,0.103688191397247,4.6525771089503,1.65495977937749,2.19753042885058,1.19472429772959,1.9922668222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| 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| ||
|short_description=p6@RBCK1 | |||
}} | }} |
Latest revision as of 04:58, 16 September 2015
Short description: | p6@RBCK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RBCK1_5end |
Coexpression cluster: | C4033_Bronchial_bile_renal_signet_Keratinocyte_hepatoma_squamous |
Association with transcript: | 58bp_to_ENST00000400247_5end |
EntrezGene: | RBCK1 |
HGNC: | 15864 |
UniProt: | A6PVJ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.01e-17 | 253 |
endodermal cell | 1.88e-15 | 58 |
endo-epithelial cell | 1.59e-11 | 42 |
respiratory epithelial cell | 2.16e-11 | 13 |
epithelial cell of stomach | 1.12e-08 | 3 |
duct epithelial cell | 2.12e-08 | 3 |
branched duct epithelial cell | 2.12e-08 | 3 |
tracheal epithelial cell | 2.12e-08 | 3 |
tracheoblast | 2.12e-08 | 3 |
embryonic cell | 1.40e-07 | 250 |
epithelial cell of tracheobronchial tree | 4.58e-07 | 9 |
epithelial cell of lower respiratory tract | 4.58e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 5.47e-09 | 101 |
endo-epithelium | 2.10e-07 | 82 |
endoderm-derived structure | 3.93e-07 | 160 |
endoderm | 3.93e-07 | 160 |
presumptive endoderm | 3.93e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.13e-09 | 106 |
cell type cancer | 2.77e-07 | 143 |
adenocarcinoma | 8.66e-07 | 25 |