FFCP PHASE1:Hg19::chr10:105846203..105846233,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1308 | |EntrezGene=1308 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2194 | |HGNC=2194 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UMD9 | |UniProt=Q9UMD9 | ||
|association_with_transcript=-443bp_to_ENST00000353479,ENST00000369733_5end | |association_with_transcript=-443bp_to_ENST00000353479,ENST00000369733_5end | ||
|cluster_id=chr10:105846203..105846233,- | |||
|description=CAGE_peak_9_at_COL17A1_5end | |description=CAGE_peak_9_at_COL17A1_5end | ||
|id=chr10:105846203..105846233,- | |id=chr10:105846203..105846233,- | ||
|ontology_enrichment_celltype=CL:0000066!1.95e-23!254;CL:0002076!5.64e-18!43;CL:0002159!7.72e-16!13;CL:0002368!3.03e-12!13;CL:0000223!9.09e-12!59;CL:0000349!7.27e-10!3;CL:0002577!7.27e-10!3;CL:0002621!1.33e-09!3;CL:0002166!1.71e-09!3;CL:0002541!1.76e-09!3;CL:0000622!6.01e-09!5;CL:0002251!7.64e-09!21;CL:0000039!8.55e-09!7;CL:0000586!8.55e-09!7;CL:0000362!2.09e-08!8;CL:0000076!3.89e-08!62;CL:0000240!1.63e-07!6;CL:0000311!1.63e-07!6;CL:0000079!1.63e-07!6;CL:0000237!1.63e-07!6;CL:0000036!1.63e-07!6;CL:0000357!1.63e-07!6;CL:0000114!1.63e-07!6;CL:0000154!1.88e-07!6;CL:0000244!3.05e-07!4;CL:0000731!3.05e-07!4;CL:0002536!3.23e-07!2;CL:0002327!7.97e-07!4 | |ontology_enrichment_celltype=CL:0000066!1.95e-23!254;CL:0002076!5.64e-18!43;CL:0002159!7.72e-16!13;CL:0002368!3.03e-12!13;CL:0000223!9.09e-12!59;CL:0000349!7.27e-10!3;CL:0002577!7.27e-10!3;CL:0002621!1.33e-09!3;CL:0002166!1.71e-09!3;CL:0002541!1.76e-09!3;CL:0000622!6.01e-09!5;CL:0002251!7.64e-09!21;CL:0000039!8.55e-09!7;CL:0000586!8.55e-09!7;CL:0000362!2.09e-08!8;CL:0000076!3.89e-08!62;CL:0000240!1.63e-07!6;CL:0000311!1.63e-07!6;CL:0000079!1.63e-07!6;CL:0000237!1.63e-07!6;CL:0000036!1.63e-07!6;CL:0000357!1.63e-07!6;CL:0000114!1.63e-07!6;CL:0000154!1.88e-07!6;CL:0000244!3.05e-07!4;CL:0000731!3.05e-07!4;CL:0002536!3.23e-07!2;CL:0002327!7.97e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000349;6.21e-29;19!CL:0002577;6.66e-22;3!CL:0002621;4.40e-21;3!CL:0002536;2.12e-15;2!CL:0002541;1.03e-10;3!CL:0002166;3.84e-10;3!CL:0000244;3.90e-08;4!CL:0000731;3.90e-08;4!CL:0002336;5.06e-08;1!CL:0002261;5.06e-08;1!CL:0002170;5.06e-08;1!CL:0002159;6.08e-08;14!CL:0002076;5.22e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,6.64e-29,19;CL:0002577,7.67e-22,3;CL:0002621,3.33e-21,3;CL:0002536,2.20e-15,2;CL:0002541,1.06e-10,3;CL:0002166,3.12e-10,3;CL:0000066,4.08e-10,253;CL:0000244,3.97e-08,4;CL:0000731,3.97e-08,4;CL:0002159,5.81e-08,14;CL:0002336,6.24e-08,1;CL:0002261,6.24e-08,1;CL:0002170,6.24e-08,1;CL:0002076,3.76e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0003124;5.06e-08;1 | |||
|ontology_enrichment_disease=DOID:1749!1.26e-16!14 | |ontology_enrichment_disease=DOID:1749!1.26e-16!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.74e-28!14;UBERON:0000158!2.74e-28!14;UBERON:0003124!3.58e-20!7;UBERON:0000478!3.26e-15!24;UBERON:0001987!2.07e-12!4;UBERON:0004340!2.07e-12!4;UBERON:0000305!1.29e-10!7;UBERON:0001949!1.33e-09!3;UBERON:0000365!1.51e-09!5;UBERON:0000476!1.76e-09!3;UBERON:0000920!1.76e-09!3;UBERON:0004871!3.15e-09!8;UBERON:0004119!5.97e-09!169;UBERON:0000925!5.97e-09!169;UBERON:0006595!5.97e-09!169;UBERON:0004923!6.84e-09!57;UBERON:0005910!6.07e-08!6;UBERON:0001708!3.38e-07!4;UBERON:0001704!3.38e-07!4;UBERON:0001911!7.97e-07!4;UBERON:0005333!7.97e-07!4;UBERON:0008425!7.97e-07!4;UBERON:0005311!7.97e-07!4 | |ontology_enrichment_uberon=UBERON:0005631!2.74e-28!14;UBERON:0000158!2.74e-28!14;UBERON:0003124!3.58e-20!7;UBERON:0000478!3.26e-15!24;UBERON:0001987!2.07e-12!4;UBERON:0004340!2.07e-12!4;UBERON:0000305!1.29e-10!7;UBERON:0001949!1.33e-09!3;UBERON:0000365!1.51e-09!5;UBERON:0000476!1.76e-09!3;UBERON:0000920!1.76e-09!3;UBERON:0004871!3.15e-09!8;UBERON:0004119!5.97e-09!169;UBERON:0000925!5.97e-09!169;UBERON:0006595!5.97e-09!169;UBERON:0004923!6.84e-09!57;UBERON:0005910!6.07e-08!6;UBERON:0001708!3.38e-07!4;UBERON:0001704!3.38e-07!4;UBERON:0001911!7.97e-07!4;UBERON:0005333!7.97e-07!4;UBERON:0008425!7.97e-07!4;UBERON:0005311!7.97e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0001987;3.60e-28;4!UBERON:0000478;9.32e-28;24!UBERON:0005631;2.83e-25;10!UBERON:0000158;2.83e-25;10!UBERON:0001949;4.40e-21;3!UBERON:0000305;1.94e-16;7!UBERON:0000486;2.19e-14;12!UBERON:0003124;1.03e-10;3!UBERON:0000920;1.03e-10;3!UBERON:0003929;2.37e-09;7!UBERON:0004923;3.21e-09;55!UBERON:0003729;1.48e-08;13!UBERON:0003350;3.05e-08;8!UBERON:0001828;3.05e-08;8!UBERON:0004913;5.06e-08;1!UBERON:0003703;5.06e-08;1!UBERON:0001174;5.06e-08;1!UBERON:0004914;5.06e-08;1!UBERON:0001708;8.10e-08;4!UBERON:0008895;8.10e-08;4!UBERON:0004807;1.27e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.10e-48,14;UBERON:0000158,1.10e-48,14;UBERON:0003124,7.72e-36,7;UBERON:0001987,4.44e-28,4;UBERON:0004340,4.44e-28,4;UBERON:0000478,1.02e-27,24;UBERON:0001949,3.33e-21,3;UBERON:0004923,5.32e-18,66;UBERON:0000305,1.91e-16,7;UBERON:0004871,2.06e-14,8;UBERON:0000920,1.06e-10,3;UBERON:0003729,1.45e-08,13;UBERON:0003350,2.76e-08,8;UBERON:0001828,2.76e-08,8;UBERON:0000995,3.42e-08,21;UBERON:0004913,4.11e-08,1;UBERON:0003703,4.11e-08,1;UBERON:0001174,4.11e-08,1;UBERON:0004914,4.11e-08,1;UBERON:0001708,6.94e-08,4;UBERON:0008895,6.94e-08,4;UBERON:0005795,8.27e-08,22;UBERON:0003975,8.27e-08,22;UBERON:0004175,7.65e-07,25 | |||
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| ||
|short_description=p9@COL17A1 | |short_description=p9@COL17A1 | ||
}} | }} |
Latest revision as of 05:05, 16 September 2015
Short description: | p9@COL17A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_COL17A1_5end |
Coexpression cluster: | NA |
Association with transcript: | -443bp_to_ENST00000353479, ENST00000369733_5end |
EntrezGene: | COL17A1 |
HGNC: | 2194 |
UniProt: | Q9UMD9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 6.64e-29 | 19 |
placental epithelial cell | 7.67e-22 | 3 |
gingival epithelial cell | 3.33e-21 | 3 |
amniotic epithelial cell | 2.20e-15 | 2 |
chorionic membrane mesenchymal stem cell | 1.06e-10 | 3 |
epithelial cell of Malassez | 3.12e-10 | 3 |
epithelial cell | 4.08e-10 | 253 |
transitional epithelial cell | 3.97e-08 | 4 |
urothelial cell | 3.97e-08 | 4 |
general ecto-epithelial cell | 5.81e-08 | 14 |
buccal mucosa cell | 6.24e-08 | 1 |
endothelial cell of viscerocranial mucosa | 6.24e-08 | 1 |
keratinized cell of the oral mucosa | 6.24e-08 | 1 |
endo-epithelial cell | 3.76e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.10e-48 | 14 |
membranous layer | 1.10e-48 | 14 |
chorion | 7.72e-36 | 7 |
placenta | 4.44e-28 | 4 |
allantois | 4.44e-28 | 4 |
extraembryonic structure | 1.02e-27 | 24 |
gingival epithelium | 3.33e-21 | 3 |
organ component layer | 5.32e-18 | 66 |
amnion | 1.91e-16 | 7 |
somatic layer of lateral plate mesoderm | 2.06e-14 | 8 |
egg chorion | 1.06e-10 | 3 |
mouth mucosa | 1.45e-08 | 13 |
epithelium of mucosa | 2.76e-08 | 8 |
gingiva | 2.76e-08 | 8 |
uterus | 3.42e-08 | 21 |
hepatopancreatic ampulla | 4.11e-08 | 1 |
extrahepatic bile duct | 4.11e-08 | 1 |
common bile duct | 4.11e-08 | 1 |
duodenal papilla | 4.11e-08 | 1 |
jaw skeleton | 6.94e-08 | 4 |
splanchnocranium | 6.94e-08 | 4 |
embryonic uterus | 8.27e-08 | 22 |
internal female genitalia | 8.27e-08 | 22 |
internal genitalia | 7.65e-07 | 25 |