FFCP PHASE1:Hg19::chr16:30124849..30124867,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:30124849..30124867,- to FFCP PHASE1:Hg19::chr16:30124849..30124867,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79153 | |EntrezGene=79153 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28638 | |HGNC=28638 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000360688_5end | |||
|cluster_id=chr16:30124849..30124867,- | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_1_at_GDPD3_5end | |||
|id=chr16:30124849..30124867,- | |||
|ontology_enrichment_celltype=CL:0002076!3.74e-14!43;CL:0000066!3.39e-12!254;CL:0000223!5.93e-12!59;CL:0002368!1.40e-07!13;CL:0002251!1.45e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.00e-11;42!CL:0002368;6.72e-10;13!CL:0002202;1.35e-09;9!CL:0002632;1.35e-09;9!CL:0002541;1.59e-07;3!CL:0002251;6.30e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.83e-15,42;CL:0000223,1.97e-11,58;CL:0002368,7.31e-10,13;CL:0000066,7.62e-10,253;CL:0002202,1.53e-09,9;CL:0002632,1.53e-09,9;CL:0002541,1.56e-07,3;CL:0002251,5.48e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.85e-08;29!CL:0000223;4.04e-07;58!UBERON:0006595;8.42e-07;86 | |||
|ontology_enrichment_disease=DOID:305!1.31e-14!106;DOID:0050687!3.81e-10!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.05e-09,106;DOID:0050687,2.00e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.58e-20!72;UBERON:0004119!4.06e-19!169;UBERON:0000925!4.06e-19!169;UBERON:0006595!4.06e-19!169;UBERON:0004921!1.34e-16!129;UBERON:0004185!1.34e-16!129;UBERON:0001007!2.47e-16!155;UBERON:0001555!2.47e-16!155;UBERON:0007026!2.47e-16!155;UBERON:0000065!2.43e-15!53;UBERON:0000077!2.37e-14!130;UBERON:0001041!3.14e-12!98;UBERON:0000072!5.90e-12!46;UBERON:0008947!2.92e-11!38;UBERON:0003258!2.92e-11!38;UBERON:0000161!1.10e-09!35;UBERON:0001557!1.48e-09!19;UBERON:0000166!1.82e-09!21;UBERON:0001737!1.05e-07!9;UBERON:0003104!1.37e-07!238;UBERON:0009142!1.37e-07!238;UBERON:0000063!2.91e-07!97 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;4.10e-12;33!UBERON:0000065;5.84e-11;44!UBERON:0001737;1.68e-10;9!UBERON:0001557;1.68e-10;9!UBERON:0000072;2.04e-10;37!UBERON:0001004;1.60e-09;65!UBERON:0001041;3.81e-09;14!UBERON:0007196;1.84e-08;15!UBERON:0001558;1.84e-08;15!UBERON:0003124;1.59e-07;3!UBERON:0000920;1.59e-07;3!UBERON:0000161;1.82e-07;19!UBERON:0000166;1.82e-07;19!UBERON:0001044;2.06e-07;6!UBERON:0003293;2.06e-07;6!UBERON:0003294;2.06e-07;6!UBERON:0010047;2.06e-07;6!UBERON:0003408;2.06e-07;6!UBERON:0000167;2.06e-07;6!UBERON:0001555;2.55e-07;54!UBERON:0005178;6.25e-07;34!UBERON:0002224;6.25e-07;34!UBERON:0000165;8.11e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,8.06e-20,160;UBERON:0000925,8.06e-20,160;UBERON:0006595,8.06e-20,160;UBERON:0001004,1.64e-19,74;UBERON:0004921,2.09e-18,118;UBERON:0001007,4.68e-18,145;UBERON:0001555,4.68e-18,145;UBERON:0007026,4.68e-18,145;UBERON:0001041,7.06e-17,87;UBERON:0000065,1.47e-16,54;UBERON:0000072,1.59e-15,47;UBERON:0008947,1.92e-13,38;UBERON:0003258,1.92e-13,38;UBERON:0001557,1.07e-12,19;UBERON:0001737,8.77e-11,9;UBERON:0000166,2.08e-09,22;UBERON:0007196,2.00e-08,15;UBERON:0001558,2.00e-08,15;UBERON:0005178,1.50e-07,34;UBERON:0002224,1.50e-07,34;UBERON:0000920,1.56e-07,3;UBERON:0001044,2.03e-07,6;UBERON:0003293,2.03e-07,6;UBERON:0003294,2.03e-07,6;UBERON:0010047,2.03e-07,6;UBERON:0000167,2.03e-07,6;UBERON:0005181,3.08e-07,35 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0.154816123316076,9.19421224478927,3.614471025339,2.58827807116751,0,0,0,0,0,0,0.223915474239924,0,0,0,0.377875943688809,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0.272906150057846,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0.425208599930087,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0,0.0945348171640679,0,0,3.27447688744282,4.37154345951051,6.67411997011973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,7.84969293856562,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0.576175924479999,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0.910161361938026,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0.600182192168805,0.103052529238439,0,0,0.843881661206331,0,0,0,0,0,0,0,1.35282597214308,1.63647672354501,0.860413786167011,0.121973706129595,0,0,0,0,0.36497735907583,0,0,1.38134921352481,0,0,1.53798840051797,1.51726221070292,0.723033089650446,1.65440959098591,1.52515610864684,1.18635309555548,1.48314438976181,1.76599318612811,3.46272441251751,0,0,0,0,0,0,0,0,2.7057456479485,0,0.329250856225877,3.37205259772859,0.201057944823262,0,0,0,0,0,0,0,0,0,17.3844967551041,18.0282094039923,0,0,0,0,0,0.141775097242386,0.179117045405697,0.581267877027924,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88215698667853,0.410952645100767,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0.460385919864187,0,0.128139149255701,0,0.321707842287215,0,1.3878872442239,0.710246901252508,2.29956036838666,0,2.09178681227927,0.725156697549733,0,4.69613043573071,0,0,0.131124414959424,0.902399225814824,0.385076685522074,0.784349769176855,0,0,0,0,0,0,0,0,1.01950509218015,0.831076008928724,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0.137836572484531,0.107420244868274,0.145016693914229,0,0,0.661139661443912,0.768760269460425,1.78657797492418,1.11273558941105,0,0.62962469366128,0,0,0.532306030317022,0,0.18532421910392,0,0,0,0,0,0,0.318203247925937,0,0,0,0,1.81964233415984,0,0.421258456238981,0,0,0,0,0,1.13008116620243,0.551365343546124,0,0.876901770507525,0,0,0,0,0,0,0,0,0,2.32218398827431,2.96365403663912,0,0,1.15466535270614,8.04362730642945,2.17781969722645,0.753150406214233,0.86101074534246,1.68471475667626,11.5291839919536,0.459446800413919,0,0,0,0,0,0,0,0,0.213648142254946,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,5.42707567183837,0,0,0,0,15.9958804774252,0.593929361665277,0.307160702099232,0,0,0,0,0,0.19924798825107,5.8019622261541,0,0,0,0,0.269605053441981,41.3538913500657,0,0.789147245095469,0,0,0,0,0,41.9288695347226,0.0874599999961957,0,0.341380344856499,4.83081935556256,8.50995654364571,0,0,0,0,0,0,0,0,0,0.21787692703798,2.78847488557207,4.54006525172403,0,5.30296980092538,1.25660702173681,5.21507385225639,92.1913351625247,18.6859090539799,100.210537891503,0,0,0,0.676786981851542,0.392125068635479,0.335643173951685,0.37950746544837,0,0,0.816164040795739,0.141353071433941,0,9.95261931078505,1.23840590304675,7.33236173920351,0,0,0,0,0,0,0,1.36965233252463,0,0,0,0,0.189559738885464,0,0,0,0,0,0,9.96133411104275,0,4.5125531967134,2.15583274311631,0,0.17472666824203,0.343972064943233,9.96590212277577,7.16275307444618,10.7571248739704,15.2272755886818,0,1.12990370390266,0,0,0,5.27988733383968,1.20238230377301,1.28071796843612,0,0.288180834308212,0,0,0,0,14.6130301462413,0.271808412147228,0.523014231561666,0,0,0,0,0,0,0,0,0,0,4.3929380109778,0,0,0.134366944973453,0,0,0.787831823072237,0.824158583811665,0.404421263125109,0,0.76205998859206,0,0,0,0,0,0,0,0,1.0063040627978,2.28536551167675,1.57363764404994,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0.904980694530854,0,0.171086837884329,2.81926008926669,0.533937062838473,0.157204305099666,1.65695622138878,0,0,0,0,0.544017803369474,0,0.306345576763462,0,0.157054096250234,0,0,0,0,0.221858103073705,0.124192805882767,2.35192679391592,0,0,0,0,0,0,1.34329322598187,0.233713309847224,1.10961172300523,0,0,6.22867855117575,0.228840068396924,0.302461847526478,0.466311601748341,0,0.159296767163702,0,0,0.829412415681711,0.265841714557995,0,0.150257608997218,0,1.22061219961398,0,0,0,0,0,0.343395705182793,1.01024846629776,0,0.192619830407303,0,0,0,0,0,0.179088841081487,0,0,0,0.578742114812744,0.506827321959218,0.256241518587947,1.0362910251936,0,0,0,0.132864840313363,0,0,1.2288645437686,0.633936370075881,0,0,0.172214979660816,0,2.02516545277025,4.75590326246111,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23887471053385,0.471878893390961,0.733714394086716,1.03973099535304,0,0,0,0,0,0,1.83334686136996,0,3.252833896775,0.0675375846183947,0,0,0,0,1.09651553371436,1.98484471355718,0,0.894336993477167,0,0,0,0,5.49954695008361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| ||
|short_description=p1@GDPD3 | |||
}} | }} |
Latest revision as of 06:42, 16 September 2015
Short description: | p1@GDPD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GDPD3_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000360688_5end |
EntrezGene: | GDPD3 |
HGNC: | 28638 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.83e-15 | 42 |
endodermal cell | 1.97e-11 | 58 |
respiratory epithelial cell | 7.31e-10 | 13 |
epithelial cell | 7.62e-10 | 253 |
epithelial cell of tracheobronchial tree | 1.53e-09 | 9 |
epithelial cell of lower respiratory tract | 1.53e-09 | 9 |
chorionic membrane mesenchymal stem cell | 1.56e-07 | 3 |
epithelial cell of alimentary canal | 5.48e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 8.06e-20 | 160 |
endoderm | 8.06e-20 | 160 |
presumptive endoderm | 8.06e-20 | 160 |
respiratory system | 1.64e-19 | 74 |
subdivision of digestive tract | 2.09e-18 | 118 |
digestive system | 4.68e-18 | 145 |
digestive tract | 4.68e-18 | 145 |
primitive gut | 4.68e-18 | 145 |
foregut | 7.06e-17 | 87 |
respiratory tract | 1.47e-16 | 54 |
segment of respiratory tract | 1.59e-15 | 47 |
respiratory primordium | 1.92e-13 | 38 |
endoderm of foregut | 1.92e-13 | 38 |
upper respiratory tract | 1.07e-12 | 19 |
larynx | 8.77e-11 | 9 |
oral opening | 2.08e-09 | 22 |
tracheobronchial tree | 2.00e-08 | 15 |
lower respiratory tract | 2.00e-08 | 15 |
thoracic cavity element | 1.50e-07 | 34 |
thoracic cavity | 1.50e-07 | 34 |
egg chorion | 1.56e-07 | 3 |
saliva-secreting gland | 2.03e-07 | 6 |
gland of oral region | 2.03e-07 | 6 |
gland of foregut | 2.03e-07 | 6 |
oral gland | 2.03e-07 | 6 |
oral cavity | 2.03e-07 | 6 |
thoracic segment organ | 3.08e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.05e-09 | 106 |
cell type cancer | 2.00e-07 | 143 |