FFCP PHASE1:Hg19::chr5:152870169..152870188,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2890 | |EntrezGene=2890 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4571 | |HGNC=4571 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000544403_5end | |association_with_transcript=0bp_to_ENST00000544403_5end | ||
|cluster_id=chr5:152870169..152870188,+ | |||
|coexpression_cluster_id=C3 | |coexpression_cluster_id=C3 | ||
|description=CAGE_peak_2_at_GRIA1_5end | |description=CAGE_peak_2_at_GRIA1_5end | ||
Latest revision as of 11:23, 16 September 2015
| Short description: | p2@GRIA1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_GRIA1_5end |
| Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
| Association with transcript: | 0bp_to_ENST00000544403_5end |
| EntrezGene: | GRIA1 |
| HGNC: | 4571 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
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CAGE Expression
| Sample | p2@GRIA1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| astrocyte of the cerebral cortex | 3.72e-08 | 3 |
| neuronal stem cell | 1.04e-07 | 8 |
Showing 1 to 2 of 2 entries
| Ontology term | p-value | n |
|---|---|---|
| neural tube | 8.68e-101 | 56 |
| neural rod | 8.68e-101 | 56 |
| future spinal cord | 8.68e-101 | 56 |
| neural keel | 8.68e-101 | 56 |
| central nervous system | 6.13e-98 | 81 |
| regional part of nervous system | 3.01e-94 | 53 |
| regional part of brain | 3.01e-94 | 53 |
| nervous system | 7.39e-90 | 89 |
| brain | 9.52e-84 | 68 |
| future brain | 9.52e-84 | 68 |
Showing 1 to 10 of 90 entries
