FFCP PHASE1:Hg19::chr5:155753923..155753934,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=6444 | |EntrezGene=6444 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=10807 | |HGNC=10807 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=E5RI34 | |UniProt=E5RI34 | ||
|association_with_transcript=-23bp_to_ENST00000524347_5end | |association_with_transcript=-23bp_to_ENST00000524347_5end | ||
|cluster_id=chr5:155753923..155753934,+ | |||
|description=CAGE_peak_5_at_SGCD_5end | |description=CAGE_peak_5_at_SGCD_5end | ||
|id=chr5:155753923..155753934,+ | |id=chr5:155753923..155753934,+ | ||
Latest revision as of 12:44, 16 September 2015
| Short description: | p5@SGCD |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_5_at_SGCD_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -23bp_to_ENST00000524347_5end |
| EntrezGene: | SGCD |
| HGNC: | 10807 |
| UniProt: | E5RI34 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p5@SGCD |
|---|
0.0
0.5
1.0
1.5
2.0
2.5
3.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| light melanocyte | 1.59e-09 | 3 |
| dark melanocyte | 4.57e-08 | 1 |
Showing 1 to 2 of 2 entries
| Ontology term | p-value | n |
|---|---|---|
| medulla oblongata | 3.32e-19 | 3 |
| myelencephalon | 3.32e-19 | 3 |
| future myelencephalon | 3.32e-19 | 3 |
| muscle structure | 6.69e-14 | 2 |
| muscle organ | 6.69e-14 | 2 |
| posterior neural tube | 2.74e-10 | 15 |
| chordal neural plate | 2.74e-10 | 15 |
| neural plate | 4.36e-10 | 82 |
| presumptive neural plate | 4.36e-10 | 82 |
| brainstem | 7.10e-10 | 6 |
Showing 1 to 10 of 93 entries
| Ontology term | p-value | n |
|---|---|---|
| bone marrow cancer | 2.98e-07 | 1 |
| myeloma | 2.98e-07 | 1 |
Showing 1 to 2 of 2 entries
