FFCP PHASE1:Hg19::chr1:235813117..235813120,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2786 | |EntrezGene=2786 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4407 | |HGNC=4407 | ||
|TSSclassifier=strong | |||
|UniProt=P50150,B1APZ0 | |UniProt=P50150,B1APZ0 | ||
|association_with_transcript=172bp_to_ENST00000391854,NM_001098722,uc001hxe.3_5end | |association_with_transcript=172bp_to_ENST00000391854,NM_001098722,uc001hxe.3_5end | ||
|cluster_id=chr1:235813117..235813120,- | |||
|coexpression_cluster_id=C1472 | |||
|description=CAGE_peak_11_at_GNG4_5end | |description=CAGE_peak_11_at_GNG4_5end | ||
|id=chr1:235813117..235813120,- | |id=chr1:235813117..235813120,- | ||
|ontology_enrichment_celltype=CL:0002319!1.21e-09!25;CL:0000133!3.79e-07!59;CL:0000095!7.39e-07!17;CL:0000123!7.39e-07!17 | |ontology_enrichment_celltype=CL:0002319!1.21e-09!25;CL:0000133!3.79e-07!59;CL:0000095!7.39e-07!17;CL:0000123!7.39e-07!17 | ||
|ontology_enrichment_celltype_v019=CL:0002553;4.72e-15;1!CL:0000167;9.36e-15;1!CL:0000164;9.36e-15;1!CL:0000502;9.36e-15;1!CL:0000172;9.36e-15;1!CL:0000173;9.36e-15;1!CL:0002535;7.52e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,4.73e-15,1;CL:0000167,1.23e-14,1;CL:0000164,1.23e-14,1;CL:0000502,1.23e-14,1;CL:0000172,1.23e-14,1;CL:0000173,1.23e-14,1;CL:0002351,1.23e-14,1;CL:0002535,6.58e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002351;9.36e-15;1!UBERON:0010122;5.01e-08;2 | |||
|ontology_enrichment_disease=DOID:0050687!6.09e-12!143;DOID:162!6.95e-11!235;DOID:14566!2.69e-10!239;DOID:305!1.58e-08!106;DOID:171!4.29e-07!10;DOID:169!4.86e-07!6;DOID:3095!8.92e-07!22;DOID:2994!8.92e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:4430;9.36e-15;1!DOID:4362;1.24e-11;5!DOID:169;6.79e-10;6!DOID:4929;5.01e-08;2!DOID:4468;7.52e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,1.23e-14,1;DOID:4362,1.15e-11,5;DOID:169,7.76e-10,6;DOID:4929,4.38e-08,2;DOID:4468,8.04e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0001017!2.97e-29!82;UBERON:0000073!6.35e-29!94;UBERON:0001016!6.35e-29!94;UBERON:0000955!2.45e-27!69;UBERON:0006238!2.45e-27!69;UBERON:0005743!3.37e-27!86;UBERON:0001049!5.67e-23!57;UBERON:0005068!5.67e-23!57;UBERON:0006241!5.67e-23!57;UBERON:0007135!5.67e-23!57;UBERON:0002616!2.74e-20!59;UBERON:0002780!8.36e-19!41;UBERON:0001890!8.36e-19!41;UBERON:0006240!8.36e-19!41;UBERON:0003080!3.63e-18!42;UBERON:0000153!1.77e-16!129;UBERON:0007811!1.77e-16!129;UBERON:0002020!2.05e-16!34;UBERON:0003528!2.05e-16!34;UBERON:0000033!2.58e-16!123;UBERON:0001893!3.49e-16!34;UBERON:0000924!4.40e-16!173;UBERON:0006601!4.40e-16!173;UBERON:0004121!2.78e-15!169;UBERON:0002791!3.05e-15!33;UBERON:0001869!1.35e-14!32;UBERON:0002346!1.66e-14!90;UBERON:0003075!1.06e-13!86;UBERON:0007284!1.06e-13!86;UBERON:0003056!3.30e-11!61;UBERON:0002308!8.61e-10!9;UBERON:0000125!8.61e-10!9;UBERON:0007023!1.83e-09!115;UBERON:0000956!3.10e-09!25;UBERON:0000203!3.10e-09!25;UBERON:0002619!6.38e-08!22;UBERON:0002420!1.25e-07!9;UBERON:0007245!1.25e-07!9;UBERON:0010009!1.25e-07!9;UBERON:0010011!1.25e-07!9;UBERON:0000454!1.25e-07!9;UBERON:0009663!1.54e-07!7;UBERON:0001950!1.66e-07!20;UBERON:0000369!2.49e-07!4;UBERON:0002435!2.49e-07!4;UBERON:0000204!2.49e-07!4;UBERON:0010082!2.49e-07!4;UBERON:0002680!5.00e-07!9;UBERON:0001895!5.00e-07!9;UBERON:0010092!5.00e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000002;7.59e-10;6!UBERON:0001560;7.59e-10;6!UBERON:0001873;5.01e-08;2!UBERON:0006955;7.52e-08;2!UBERON:0004801;7.52e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000002,7.10e-10,6;UBERON:0001560,7.10e-10,6;UBERON:0001873,4.69e-08,2;UBERON:0010122,4.69e-08,2;UBERON:0006955,6.58e-08,2;UBERON:0004801,6.58e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.655324116390517,0,0,0,0,0,0,0,0.246242116153576,0,0,0.572471974262113,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.232387885739037,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.185803175125719,0,0,0.797131363644112,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0.671028323677248,0,0,0,0,0.540911356951966,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0.422008249231538,0,0,0,0,0,1.76352923497993,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,3.99227596002388,0,0,0,1.137934482855,0,0.236387681767936,1.03423011972439,0,0.347249989866585,2.65722415744152,0.723578631752448,1.52581736317083,0.110579259931225,0.591095237907095,0,0,0,0.153900517007594,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,1.26598838716816,0,0,0,0,0,0,0,0.741383633679017,0.939797545549098,0.134802265961354,0,0.702793337176017,0,0.19566461893209,0,0,0,0,0,0,0.207376382794494,0,0,0.313932918407225,0,0.284609546029793,0,0,0,0.0870592065804026,0,0,0,0,0,0,0.176512253383001,0,0.137041924646751,0,0.189932387867636,0,0,0,0,0.144090417154106,0.687219576995494,0.171594997861965,0.288109595976299,0,0,0.271808412147228,0.209205692624666,0.101998217636322,0.288950589901519,0,0.136905378891993,0,0.429765441419957,0,0,0,0,0.399358000997982,0,0,0,0,0,0.472699093843342,0.247247575143499,0.202210631562555,0,0,0,0.408610218334727,0.160753148465019,0.137539436597234,0.415440338029185,0,0,0.303747783290123,0.335434687599266,0.157611414598396,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.387848869084652,0.26446520348538,0.171086837884329,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0.157054096250234,0,0.244052529803926,0.1251909307065,0,0,0.124192805882767,0.276697269872462,0.124980407962107,0,0,0,0,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0.308801447160972,0.657852148736121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0.184105950251841,0,0,0.639471856518258,2.15649622793364,0.314531883711793,0.54604819096007,0.169732529954025,0,0,0,0,0,6.40456598628376,0.352675943690684,0,0.513833800771676,0,0,0.41023272848151,1.76450187355203,0.276629009856872,0.161475645631851,0,0,0.353909170043221,0,0.693153996902029,0,0,0.596748666348824,0,0,0,0,0,0,0.270150338473579,0,0,0.317079050969534,0.546974809018219,0,0,0.527613733078862,0.127762427639595,0,0,0.606965604236632,0.682986574053893,0.0887023701626388,0,0,0.135939465953663,0.394636641377094,0.354581522651905,0,0,0.628462359664008,0,0,0,0,0,0.632054446930906,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74303141539369,0.795803100645473,0,0.5647304101948,0.329821550236287,2.41540549706678,0,0.437119121007915,0.940634592723046,0,2.12108892391463,0,0,0.4226557275834,0,0,0,0,0.178553938605658,0,0,0,0,0.143339583151451,0,0.339957450954573,1.30905207102113,0,0,0,0,0.126166424835079,0.218531143927391,0,0.203977659483963,0,0.0918948995348449,0,0,0.267964130156178,0.829169439458779,0,0.213233981900981,0,0.0645889098360061,0,0,0,0,0,0.684466602170562,0.134704106029175,0.0717222053926763,0,0.651226148887796,0,0,2.78458126530419,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.655324116390517,0,0,0,0,0,0,0,0.246242116153576,0,0,0.572471974262113,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.232387885739037,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.185803175125719,0,0,0.797131363644112,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0.671028323677248,0,0,0,0,0.540911356951966,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0.422008249231538,0,0,0,0,0,1.76352923497993,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,3.99227596002388,0,0,0,1.137934482855,0,0.236387681767936,1.03423011972439,0,0.347249989866585,2.65722415744152,0.723578631752448,1.52581736317083,0.110579259931225,0.591095237907095,0,0,0,0.153900517007594,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,1.26598838716816,0,0,0,0,0,0,0,0.741383633679017,0.939797545549098,0.134802265961354,0,0.702793337176017,0,0.19566461893209,0,0,0,0,0,0,0.207376382794494,0,0,0.313932918407225,0,0.284609546029793,0,0,0,0.0870592065804026,0,0,0,0,0,0,0.176512253383001,0,0.137041924646751,0,0.189932387867636,0,0,0,0,0.144090417154106,0.687219576995494,0.171594997861965,0.288109595976299,0,0,0.271808412147228,0.209205692624666,0.101998217636322,0.288950589901519,0,0.136905378891993,0,0.429765441419957,0,0,0,0,0.399358000997982,0,0,0,0,0,0.472699093843342,0.247247575143499,0.202210631562555,0,0,0,0.408610218334727,0.160753148465019,0.137539436597234,0.415440338029185,0,0,0.303747783290123,0.335434687599266,0.157611414598396,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.387848869084652,0.26446520348538,0.171086837884329,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0.157054096250234,0,0.244052529803926,0.1251909307065,0,0,0.124192805882767,0.276697269872462,0.124980407962107,0,0,0,0,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0.308801447160972,0.657852148736121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0.184105950251841,0,0,0.639471856518258,2.15649622793364,0.314531883711793,0.54604819096007,0.169732529954025,0,0,0,0,0,6.40456598628376,0.352675943690684,0,0.513833800771676,0,0,0.41023272848151,1.76450187355203,0.276629009856872,0.161475645631851,0,0,0.353909170043221,0,0.693153996902029,0,0,0.596748666348824,0,0,0,0,0,0,0.270150338473579,0,0,0.317079050969534,0.546974809018219,0,0,0.527613733078862,0.127762427639595,0,0,0.606965604236632,0.682986574053893,0.0887023701626388,0,0,0.135939465953663,0.394636641377094,0.354581522651905,0,0,0.628462359664008,0,0,0,0,0,0.632054446930906,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74303141539369,0.795803100645473,0,0.5647304101948,0.329821550236287,2.41540549706678,0,0.437119121007915,0.940634592723046,0,2.12108892391463,0,0,0.4226557275834,0,0,0,0,0.178553938605658,0,0,0,0,0.143339583151451,0,0.339957450954573,1.30905207102113,0,0,0,0,0.126166424835079,0.218531143927391,0,0.203977659483963,0,0.0918948995348449,0,0,0.267964130156178,0.829169439458779,0,0.213233981900981,0,0.0645889098360061,0,0,0,0,0,0.684466602170562,0.134704106029175,0.0717222053926763,0,0.651226148887796,0,0,2.78458126530419,0,0.122241444182866,0,0,0,0 | ||
|short_description=p11@GNG4 | |short_description=p11@GNG4 | ||
}} | }} |
Latest revision as of 12:46, 16 September 2015
Short description: | p11@GNG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_GNG4_5end |
Coexpression cluster: | C1472_nonsmall_neuroblastoma_small_tubular_carcinoid_smallcell_merkel |
Association with transcript: | 172bp_to_ENST00000391854, NM_001098722, uc001hxe.3_5end |
EntrezGene: | GNG4 |
HGNC: | 4407 |
UniProt: | P50150B1APZ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 4.73e-15 | 1 |
peptide hormone secreting cell | 1.23e-14 | 1 |
enteroendocrine cell | 1.23e-14 | 1 |
type D enteroendocrine cell | 1.23e-14 | 1 |
somatostatin secreting cell | 1.23e-14 | 1 |
pancreatic D cell | 1.23e-14 | 1 |
progenitor cell of endocrine pancreas | 1.23e-14 | 1 |
epithelial cell of cervix | 6.58e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
uterine cervix | 7.10e-10 | 6 |
neck of organ | 7.10e-10 | 6 |
caudate nucleus | 4.69e-08 | 2 |
future caudate nucleus | 4.69e-08 | 2 |
uterine epithelium | 6.58e-08 | 2 |
cervix epithelium | 6.58e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 1.23e-14 | 1 |
cervical cancer | 1.15e-11 | 5 |
neuroendocrine tumor | 7.76e-10 | 6 |
tubular adenocarcinoma | 4.38e-08 | 2 |
clear cell adenocarcinoma | 8.04e-08 | 2 |