FFCP PHASE1:Hg19::chr12:115122303..115122314,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:115122303..115122314,- to FFCP PHASE1:Hg19::chr12:115122303..115122314,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6926 | |EntrezGene=6926 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11602 | |HGNC=11602 | ||
|TSSclassifier=strong | |||
|UniProt=C9JIZ8,O15119 | |UniProt=C9JIZ8,O15119 | ||
|association_with_transcript=-334bp_to_ENST00000349155,ENST00000361100,NM_005996,NM_016569,uc001tvt.1,uc001tvu.1,uc010syw.1_5end | |||
|cluster_id=chr12:115122303..115122314,- | |||
|coexpression_cluster_id=C43 | |||
|description=CAGE_peak_6_at_TBX3_5end | |||
|id=chr12:115122303..115122314,- | |||
|ontology_enrichment_celltype=CL:0000057!2.15e-07!75;CL:0000055!5.45e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0002552;1.27e-10;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002552,1.13e-10,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!1.55e-15!347;UBERON:0000475!1.87e-14!365;UBERON:0000468!3.37e-11!659;UBERON:0007023!4.01e-11!115;UBERON:0005256!1.81e-10!143;UBERON:0000914!4.39e-09!83;UBERON:0002329!4.39e-09!83;UBERON:0003077!4.39e-09!83;UBERON:0003059!4.39e-09!83;UBERON:0007282!4.39e-09!83;UBERON:0009618!4.39e-09!83;UBERON:0007285!4.39e-09!83;UBERON:0000477!5.56e-09!286;UBERON:0003102!1.90e-08!95;UBERON:0000467!2.92e-08!625;UBERON:0002100!3.37e-08!216;UBERON:0000480!3.82e-08!626;UBERON:0003104!4.64e-08!238;UBERON:0009142!4.64e-08!238;UBERON:0000922!1.50e-07!612;UBERON:0002050!4.14e-07!605;UBERON:0005423!4.14e-07!605;UBERON:0000119!7.67e-07!312;UBERON:0000923!8.13e-07!604;UBERON:0005291!8.13e-07!604;UBERON:0006598!8.13e-07!604;UBERON:0002532!8.13e-07!604;UBERON:0004111!8.76e-07!241;UBERON:0000483!8.81e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0000075;3.58e-09;16!UBERON:0006947;1.06e-07;3!UBERON:0004054;1.06e-07;3!UBERON:0011135;9.91e-07;5!UBERON:0002216;9.91e-07;5!UBERON:0011134;9.91e-07;5!UBERON:0002209;9.91e-07;5!UBERON:0002213;9.91e-07;5!UBERON:0007844;9.91e-07;5!UBERON:0011138;9.91e-07;5!UBERON:0001130;9.91e-07;5!UBERON:0001066;9.91e-07;5!UBERON:0001468;9.91e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,2.20e-10,160;UBERON:0009142,2.20e-10,160;UBERON:0000075,2.76e-09,16;UBERON:0005256,1.60e-08,122;UBERON:0004119,1.80e-08,160;UBERON:0000925,1.80e-08,160;UBERON:0006595,1.80e-08,160;UBERON:0001007,3.82e-08,145;UBERON:0001555,3.82e-08,145;UBERON:0007026,3.82e-08,145;UBERON:0006947,1.03e-07,3;UBERON:0004054,1.03e-07,3;UBERON:0003102,3.04e-07,99;UBERON:0011135,6.59e-07,5;UBERON:0002216,6.59e-07,5;UBERON:0011134,6.59e-07,5;UBERON:0002209,6.59e-07,5;UBERON:0002213,6.59e-07,5;UBERON:0005856,6.59e-07,5;UBERON:0005866,6.59e-07,5;UBERON:0005863,6.59e-07,5;UBERON:0007844,6.59e-07,5;UBERON:0011138,6.59e-07,5;UBERON:0001130,6.59e-07,5;UBERON:0001066,6.59e-07,5;UBERON:0001468,6.59e-07,5 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0.631719873426831,0,2.21160542851358,0,0,0,6.80714941280256,2.98257638155124,0,0,0.730310090387373,0,0.369363174230364,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0.221729397462564,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06729878806013,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0.269421344139376,1.14423332179421,0.151357427644931,0.576175924479999,0,2.80944069147288,0,1.19558944441441,0.23486899728753,0.323745888736263,0,7.14539599392126,1.22834317311768,8.0594109317097,5.94001428641027,2.71993622206413,0,0,8.58514181165738,8.00758527180571,3.87889761677856,0.877955241761676,0.612975591598039,2.25357088359895,0.113432183160021,0,0,0.211931901159562,2.40072876867522,0.206105058476878,0,0.18611685633159,0.168776332241266,0.194874010322397,0.252433774244115,0.368199594569197,0,1.06502877754984,0.10075209822764,0.67824236924195,0,0,0,0,0,0.232387885739037,0,0.252320850875628,0,1.56449532329816,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,2.36315962672562,0,0,0,0.109750285408626,0,0,0,0,2.07986957055916,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.411309970813294,0,0,0.112131084345361,0,0.1466765716419,0.646358578788889,0,0.845302752556,2.12750493267896,0,1.02882949704857,4.25547396069835,0.532844358032199,0.714889968290738,6.51145926469732,0.823240336780769,0.65147236858747,1.06617584622764,3.16780749173372,0,0,0.099972991182057,0,0,0,0,0,0,0.434343920002738,3.28762116080613,0.895304816199478,0,0,0,0,0,0,0,0,0,0,0,0,3.0672872929785,0,1.89885516589815,0.623912584592421,1.78428988797162,4.1002627908823,7.26276772954822,0,0,0,0,0.921845842708516,1.99832313276591,0.195801157462741,0.686286847621712,0,0,0,0.303127571446259,0,0,0.248107807818777,0.460385919864187,0.280660094433074,0,0,0.160853921143607,0,2.62156479464514,1.06537035187876,2.29956036838666,1.55776328755086,2.67283870457906,0.120859449591622,0.601519410909855,0,0.68888668898764,1.0925470080403,1.18011973463482,0,0,0,0,0,0,0,0,0,1.35473218771926,0.501689773854853,0,0,0,0,0,0,0,0,3.60643540767028,0,0,0,0,0,0.676695028044854,0.154048617114644,0.307007349452259,0.827019434907183,0.322260734604821,1.59518363305651,1.19317278382541,0,0,0,0,0,0,0,1.3940745403212,0,0.532306030317022,0,0.9266210955196,1.28812398067792,0,0,0,2.55897791311334,5.56320684444097,0,0.78494864019923,0,0,0,0.404364963146632,0,0.421258456238981,0,0.243713489631284,1.05650146756755,0.818999468447914,0.424216295861138,0,0.551365343546124,2.65375590096488,3.5076070820301,1.15755106853338,1.9676842561399,0.202910376962704,0.92947049429925,0.845086807596724,0.573645408816206,0,0.35667105148125,2.48332744849418,0,0,0,0.349934720244983,0,0,0,5.74277184738353,0.86101074534246,0,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0.562677665642051,0.333926115068718,0,0,0,0.552567831062295,0,0.20453736500431,0,0.311039587661807,0,0,0,5.12945709312055,0,0,0,0.0927680981618513,0,0.260427761085233,0.0874599999961957,2.89999830173917,0,0,0,0,0,0,0.885741385813839,0.482385754501632,0,0.110579259931225,0,0,0,0.278847488557207,1.23120413606075,0.341826167541004,0,0,0.108647371922008,0,0.824378340616761,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0.282706142867882,0.216388639742091,1.99052386215701,0.353830258013357,0.611030144933625,0,0,0,0.808813595768125,0,0,0,0,0,37.0909338678427,1.20990716048664,0,0,0,0.207376382794494,0,0,0.627865836814451,0,0,0.693373365065693,0,0.0979923974143777,0.174118413160805,4.54289337429278,0,0.483781656445426,0.438535902517113,0.410577285266046,0,0.0882561266915003,0.451961481561065,0,1.58971689362392,0.0633107959558787,0,0,1.06726497369676,0,0,0,0,0,0,0,0,0,0.305994652908965,0,0,1.23214841002794,0,0,0,0.279282401272254,0,0,0.199679000498991,0.429226048136571,0.223171457441873,0.134366944973453,0,20.9692709149417,1.10296455230113,1.40106959247983,1.14586024552114,0.393709926058995,0,0,0.272406812223151,0,0,0,0,0.77380195455795,0.242998226632099,0,0.394028536495991,1.67854682031994,0,0,0.383830394638891,0.714695326373367,0.662091970365432,0,0,0,0.653174720218818,3.59190574687462,0,3.40776043570843,1.35974509824151,1.02586563574658,0,0.129282956361551,1.05786081394152,0,0,4.27149650270779,4.40172054279065,2.89967338743037,0.496166021811951,0,0,0.638341257770182,0,0.2506898940227,0.612691153526923,0.327872630709804,1.09937867375164,0,0.244052529803926,0.751145584238999,0,0.443716206147409,0.18628920882415,0.553394539744923,0,0.303298235083296,0,0,0,0.144921028610825,0.597019211547496,0,0,0,0,0,0.228840068396924,0.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| 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| ||
|short_description=p6@TBX3 | |||
}} | }} |
Latest revision as of 14:41, 16 September 2015
Short description: | p6@TBX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TBX3_5end |
Coexpression cluster: | C43_ductus_seminal_duodenum_temporal_gall_prostate_bladder |
Association with transcript: | -334bp_to_ENST00000349155, ENST00000361100, NM_005996, NM_016569, uc001tvt.1, uc001tvu.1, uc010syw.1_5end |
EntrezGene: | TBX3 |
HGNC: | 11602 |
UniProt: | C9JIZ8O15119 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of gingiva | 1.13e-10 | 5 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 2.20e-10 | 160 |
entire embryonic mesenchyme | 2.20e-10 | 160 |
subdivision of skeletal system | 2.76e-09 | 16 |
trunk mesenchyme | 1.60e-08 | 122 |
endoderm-derived structure | 1.80e-08 | 160 |
endoderm | 1.80e-08 | 160 |
presumptive endoderm | 1.80e-08 | 160 |
digestive system | 3.82e-08 | 145 |
digestive tract | 3.82e-08 | 145 |
primitive gut | 3.82e-08 | 145 |
male genital duct | 1.03e-07 | 3 |
internal male genitalia | 1.03e-07 | 3 |
surface structure | 3.04e-07 | 99 |
intervertebral cartilage | 6.59e-07 | 5 |
symphysis | 6.59e-07 | 5 |
nonsynovial joint | 6.59e-07 | 5 |
fibrous joint | 6.59e-07 | 5 |
cartilaginous joint | 6.59e-07 | 5 |
developing mesenchymal condensation | 6.59e-07 | 5 |
pre-cartilage condensation | 6.59e-07 | 5 |
cartilaginous condensation | 6.59e-07 | 5 |
cartilage element | 6.59e-07 | 5 |
post-cranial axial skeletal system | 6.59e-07 | 5 |
vertebral column | 6.59e-07 | 5 |
intervertebral disk | 6.59e-07 | 5 |
intervertebral joint | 6.59e-07 | 5 |