FFCP PHASE1:Hg19::chr3:169530320..169530344,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=151827 | |EntrezGene=151827 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28408 | |HGNC=28408 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-7bp_to_ENST00000522080_5end | |association_with_transcript=-7bp_to_ENST00000522080_5end | ||
|cluster_id=chr3:169530320..169530344,- | |||
|coexpression_cluster_id=C111 | |||
|description=CAGE_peak_2_at_LRRC34_5end | |description=CAGE_peak_2_at_LRRC34_5end | ||
|id=chr3:169530320..169530344,- | |id=chr3:169530320..169530344,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010122;4.02e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.52e-20!57;UBERON:0005068!5.52e-20!57;UBERON:0006241!5.52e-20!57;UBERON:0007135!5.52e-20!57;UBERON:0000073!1.09e-19!94;UBERON:0001016!1.09e-19!94;UBERON:0002616!4.38e-18!59;UBERON:0005743!7.42e-17!86;UBERON:0002780!1.10e-16!41;UBERON:0001890!1.10e-16!41;UBERON:0006240!1.10e-16!41;UBERON:0001017!1.40e-16!82;UBERON:0002020!1.72e-16!34;UBERON:0003528!1.72e-16!34;UBERON:0001893!3.41e-16!34;UBERON:0002346!4.28e-16!90;UBERON:0003080!6.05e-16!42;UBERON:0007023!6.21e-16!115;UBERON:0003075!6.77e-16!86;UBERON:0007284!6.77e-16!86;UBERON:0002791!7.96e-16!33;UBERON:0000955!9.04e-16!69;UBERON:0006238!9.04e-16!69;UBERON:0001869!1.58e-15!32;UBERON:0003056!2.47e-13!61;UBERON:0000956!1.39e-11!25;UBERON:0000203!1.39e-11!25;UBERON:0002619!7.87e-11!22;UBERON:0001950!1.44e-09!20;UBERON:0000153!2.41e-09!129;UBERON:0007811!2.41e-09!129;UBERON:0000924!2.58e-09!173;UBERON:0006601!2.58e-09!173;UBERON:0004121!5.06e-09!169;UBERON:0000033!2.05e-08!123 | |ontology_enrichment_uberon=UBERON:0001049!5.52e-20!57;UBERON:0005068!5.52e-20!57;UBERON:0006241!5.52e-20!57;UBERON:0007135!5.52e-20!57;UBERON:0000073!1.09e-19!94;UBERON:0001016!1.09e-19!94;UBERON:0002616!4.38e-18!59;UBERON:0005743!7.42e-17!86;UBERON:0002780!1.10e-16!41;UBERON:0001890!1.10e-16!41;UBERON:0006240!1.10e-16!41;UBERON:0001017!1.40e-16!82;UBERON:0002020!1.72e-16!34;UBERON:0003528!1.72e-16!34;UBERON:0001893!3.41e-16!34;UBERON:0002346!4.28e-16!90;UBERON:0003080!6.05e-16!42;UBERON:0007023!6.21e-16!115;UBERON:0003075!6.77e-16!86;UBERON:0007284!6.77e-16!86;UBERON:0002791!7.96e-16!33;UBERON:0000955!9.04e-16!69;UBERON:0006238!9.04e-16!69;UBERON:0001869!1.58e-15!32;UBERON:0003056!2.47e-13!61;UBERON:0000956!1.39e-11!25;UBERON:0000203!1.39e-11!25;UBERON:0002619!7.87e-11!22;UBERON:0001950!1.44e-09!20;UBERON:0000153!2.41e-09!129;UBERON:0007811!2.41e-09!129;UBERON:0000924!2.58e-09!173;UBERON:0006601!2.58e-09!173;UBERON:0004121!5.06e-09!169;UBERON:0000033!2.05e-08!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0000125;3.23e-10;9!UBERON:0002308;3.23e-10;9!UBERON:0002780;2.25e-09;41!UBERON:0001890;2.25e-09;41!UBERON:0005383;2.87e-09;3!UBERON:0005382;2.87e-09;3!UBERON:0002021;2.97e-08;5!UBERON:0000073;7.59e-08;53!UBERON:0002616;7.59e-08;53!UBERON:0002298;1.78e-07;6!UBERON:0001873;4.02e-07;2!UBERON:0000369;5.00e-07;4!UBERON:0002435;5.00e-07;4!UBERON:0000204;5.00e-07;4!UBERON:0000007;8.41e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.95e-13,56;UBERON:0005068,1.95e-13,56;UBERON:0006241,1.95e-13,56;UBERON:0007135,1.95e-13,56;UBERON:0007023,5.31e-13,114;UBERON:0000073,8.39e-13,53;UBERON:0002616,8.39e-13,53;UBERON:0001016,1.32e-12,89;UBERON:0002780,1.46e-10,41;UBERON:0001890,1.46e-10,41;UBERON:0003080,1.46e-10,41;UBERON:0006240,1.46e-10,41;UBERON:0002346,3.70e-10,86;UBERON:0000125,4.54e-10,9;UBERON:0002308,4.54e-10,9;UBERON:0000955,5.40e-10,68;UBERON:0006238,5.40e-10,68;UBERON:0001017,7.86e-10,81;UBERON:0003075,9.80e-10,82;UBERON:0007284,9.80e-10,82;UBERON:0005383,1.87e-09,3;UBERON:0005382,1.87e-09,3;UBERON:0002021,1.26e-08,5;UBERON:0010371,3.15e-08,104;UBERON:0003528,3.97e-08,34;UBERON:0002020,3.97e-08,34;UBERON:0003056,3.99e-08,61;UBERON:0002298,2.57e-07,6;UBERON:0000369,3.64e-07,4;UBERON:0002435,3.64e-07,4;UBERON:0000204,3.64e-07,4;UBERON:0010082,3.64e-07,4;UBERON:0001873,4.11e-07,2;UBERON:0010122,4.11e-07,2;UBERON:0001893,8.35e-07,34;UBERON:0000007,8.60e-07,2 | |||
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| ||
|short_description=p2@LRRC34 | |short_description=p2@LRRC34 | ||
}} | }} |
Latest revision as of 15:02, 16 September 2015
Short description: | p2@LRRC34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRRC34_5end |
Coexpression cluster: | C111_medulla_lung_trachea_testis_caudate_epididymis_throat |
Association with transcript: | -7bp_to_ENST00000522080_5end |
EntrezGene: | LRRC34 |
HGNC: | 28408 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 1.95e-13 | 56 |
neural rod | 1.95e-13 | 56 |
future spinal cord | 1.95e-13 | 56 |
neural keel | 1.95e-13 | 56 |
adult organism | 5.31e-13 | 114 |
regional part of nervous system | 8.39e-13 | 53 |
regional part of brain | 8.39e-13 | 53 |
nervous system | 1.32e-12 | 89 |
regional part of forebrain | 1.46e-10 | 41 |
forebrain | 1.46e-10 | 41 |
anterior neural tube | 1.46e-10 | 41 |
future forebrain | 1.46e-10 | 41 |
neurectoderm | 3.70e-10 | 86 |
neural nucleus | 4.54e-10 | 9 |
nucleus of brain | 4.54e-10 | 9 |
brain | 5.40e-10 | 68 |
future brain | 5.40e-10 | 68 |
central nervous system | 7.86e-10 | 81 |
neural plate | 9.80e-10 | 82 |
presumptive neural plate | 9.80e-10 | 82 |
caudate-putamen | 1.87e-09 | 3 |
dorsal striatum | 1.87e-09 | 3 |
occipital lobe | 1.26e-08 | 5 |
ecto-epithelium | 3.15e-08 | 104 |
brain grey matter | 3.97e-08 | 34 |
gray matter | 3.97e-08 | 34 |
pre-chordal neural plate | 3.99e-08 | 61 |
brainstem | 2.57e-07 | 6 |
corpus striatum | 3.64e-07 | 4 |
striatum | 3.64e-07 | 4 |
ventral part of telencephalon | 3.64e-07 | 4 |
future corpus striatum | 3.64e-07 | 4 |
caudate nucleus | 4.11e-07 | 2 |
future caudate nucleus | 4.11e-07 | 2 |
telencephalon | 8.35e-07 | 34 |
pituitary gland | 8.60e-07 | 2 |