FFCP PHASE1:Hg19::chr20:45948030..45948047,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=23613 | |EntrezGene=23613 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=9397 | |HGNC=9397 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=Q5JV90 | |UniProt=Q5JV90 | ||
|association_with_transcript=-225bp_to_ENST00000468376,uc002xtg.2_5end | |association_with_transcript=-225bp_to_ENST00000468376,uc002xtg.2_5end | ||
|cluster_id=chr20:45948030..45948047,- | |||
|coexpression_cluster_id=C128 | |coexpression_cluster_id=C128 | ||
|description=CAGE_peak_16_at_ZMYND8_5end | |description=CAGE_peak_16_at_ZMYND8_5end | ||
Latest revision as of 15:32, 16 September 2015
| Short description: | p16@ZMYND8 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_16_at_ZMYND8_5end |
| Coexpression cluster: | C128_testicular_choriocarcinoma_H9_teratocarcinoma_pancreatic_iPS_HES3GFP |
| Association with transcript: | -225bp_to_ENST00000468376, uc002xtg.2_5end |
| EntrezGene: | ZMYND8 |
| HGNC: | 9397 |
| UniProt: | Q5JV90 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p16@ZMYND8 |
|---|
0
2
4
6
8
10
12
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| germ line cell | 1.41e-22 | 7 |
| germ cell | 1.41e-22 | 7 |
| astrocyte of the cerebral cortex | 1.82e-13 | 3 |
| oligodendrocyte | 1.16e-12 | 7 |
| macroglial cell | 1.16e-12 | 7 |
| astrocyte | 1.16e-12 | 7 |
| oligodendrocyte precursor cell | 1.16e-12 | 7 |
| neural cell | 1.02e-08 | 25 |
Showing 1 to 8 of 8 entries
| Ontology term | p-value | n |
|---|---|---|
| testis | 8.58e-20 | 8 |
| multi cell component structure | 8.72e-20 | 2 |
| neuron projection bundle | 8.72e-20 | 2 |
| globus pallidus | 1.41e-19 | 2 |
| pallidum | 1.41e-19 | 2 |
| nervous system | 2.65e-15 | 89 |
| central nervous system | 1.57e-14 | 81 |
| male reproductive organ | 1.83e-14 | 11 |
| regional part of forebrain | 2.54e-13 | 41 |
| forebrain | 2.54e-13 | 41 |
Showing 1 to 10 of 56 entries
| Ontology term | p-value | n |
|---|---|---|
| germ cell and embryonal cancer | 5.05e-11 | 22 |
| germ cell cancer | 5.05e-11 | 22 |
Showing 1 to 2 of 2 entries
