FFCP PHASE2:Hg19::chr2:27719697..27719723,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:2646 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:4196 |TSSclass...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=2646 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=4196 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q14397,B4DPQ2,F5H1P6 | ||
|association_with_transcript=0bp_to_ENST00000264717,ENST00000417872,ENST00000424318,NM_001486,uc002rky.2,uc010ezd.2,uc010ylu.1_5end | |association_with_transcript=0bp_to_ENST00000264717,ENST00000417872,ENST00000424318,NM_001486,uc002rky.2,uc010ezd.2,uc010ylu.1_5end | ||
|cluster_id=chr2:27719697..27719723,+ | |cluster_id=chr2:27719697..27719723,+ | ||
Latest revision as of 17:45, 16 September 2015
| Short description: | p1@GCKR |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_GCKR_5end |
| Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
| Association with transcript: | 0bp_to_ENST00000264717, ENST00000417872, ENST00000424318, NM_001486, uc002rky.2, uc010ezd.2, uc010ylu.1_5end |
| EntrezGene: | GCKR |
| HGNC: | 4196 |
| UniProt: | Q14397B4DPQ2F5H1P6 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@GCKR |
|---|
0
10
20
30
40
50
60
70
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| hepatocyte | 5.91e-14 | 12 |
| endothelial cell of artery | 7.20e-13 | 9 |
| classical monocyte | 1.99e-11 | 42 |
| CD14-positive, CD16-negative classical monocyte | 1.99e-11 | 42 |
| vascular associated smooth muscle cell | 7.68e-11 | 32 |
| aortic endothelial cell | 3.08e-10 | 6 |
| defensive cell | 1.53e-09 | 48 |
| phagocyte | 1.53e-09 | 48 |
| macrophage dendritic cell progenitor | 6.57e-09 | 61 |
| smooth muscle cell of the subclavian artery | 1.92e-08 | 5 |
Showing 1 to 10 of 21 entries
| Ontology term | p-value | n |
|---|---|---|
| systemic artery | 2.59e-29 | 33 |
| systemic arterial system | 2.59e-29 | 33 |
| artery | 1.14e-26 | 42 |
| arterial blood vessel | 1.14e-26 | 42 |
| arterial system | 1.14e-26 | 42 |
| epithelial tube | 1.53e-21 | 117 |
| aorta | 5.15e-18 | 21 |
| aortic system | 5.15e-18 | 21 |
| epithelial tube open at both ends | 3.21e-17 | 59 |
| blood vessel | 3.21e-17 | 59 |
Showing 1 to 10 of 52 entries
