FFCP PHASE1:Hg19::chr13:21750659..21750735,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221150 | |EntrezGene=221150 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20262 | |HGNC=20262 | ||
|TSSclassifier=strong | |||
|UniProt=F5H8H7,F5GWG1 | |UniProt=F5H8H7,F5GWG1 | ||
|association_with_transcript=0bp_to_ENST00000298260,ENST00000400018,ENST00000462482,ENST00000465471,uc001unt.2,uc001unu.2,uc001unv.2_5end | |association_with_transcript=0bp_to_ENST00000298260,ENST00000400018,ENST00000462482,ENST00000465471,uc001unt.2,uc001unu.2,uc001unv.2_5end | ||
|cluster_id=chr13:21750659..21750735,- | |||
|coexpression_cluster_id=C109 | |||
|description=CAGE_peak_1_at_SKA3_5end | |description=CAGE_peak_1_at_SKA3_5end | ||
|id=chr13:21750659..21750735,- | |id=chr13:21750659..21750735,- | ||
|ontology_enrichment_celltype=CL:0000548!6.68e-17!679;CL:0000004!6.68e-17!679;CL:0000255!6.68e-17!679;CL:0000012!7.94e-17!682;CL:0000066!1.73e-15!254;CL:0002321!8.09e-10!248;CL:0000220!3.21e-09!246;CL:0000003!4.57e-09!722;CL:0000333!7.20e-08!41;CL:0000133!9.63e-08!59;CL:0000055!2.09e-07!180;CL:0000063!3.33e-07!578;CL:0000221!6.03e-07!71;CL:0000144!6.12e-07!625;CL:0002319!8.26e-07!25 | |ontology_enrichment_celltype=CL:0000548!6.68e-17!679;CL:0000004!6.68e-17!679;CL:0000255!6.68e-17!679;CL:0000012!7.94e-17!682;CL:0000066!1.73e-15!254;CL:0002321!8.09e-10!248;CL:0000220!3.21e-09!246;CL:0000003!4.57e-09!722;CL:0000333!7.20e-08!41;CL:0000133!9.63e-08!59;CL:0000055!2.09e-07!180;CL:0000063!3.33e-07!578;CL:0000221!6.03e-07!71;CL:0000144!6.12e-07!625;CL:0002319!8.26e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0002319;5.82e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.83e-16,253;CL:0002321,1.39e-09,250;CL:0000333,5.67e-08,41;CL:0000133,8.22e-08,59;CL:0002319,6.47e-07,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.64e-47!235;DOID:14566!2.14e-46!239;DOID:0050686!1.38e-25!137;DOID:2531!7.55e-22!51;DOID:0060083!7.55e-22!51;DOID:0050687!9.12e-21!143;DOID:1240!8.00e-18!39;DOID:305!1.27e-15!106;DOID:8692!4.81e-14!31 | |ontology_enrichment_disease=DOID:162!2.64e-47!235;DOID:14566!2.14e-46!239;DOID:0050686!1.38e-25!137;DOID:2531!7.55e-22!51;DOID:0060083!7.55e-22!51;DOID:0050687!9.12e-21!143;DOID:1240!8.00e-18!39;DOID:305!1.27e-15!106;DOID:8692!4.81e-14!31 | ||
|ontology_enrichment_disease_v019=DOID:1240;1.65e-14;39!DOID:8692;6.51e-14;31!DOID:2531;1.31e-13;51!DOID:0060083;1.31e-13;51!DOID:0050686;8.58e-07;137 | |||
|ontology_enrichment_disease_v019_2=DOID:162,8.33e-48,235;DOID:14566,9.46e-47,239;DOID:0050686,7.12e-26,137;DOID:2531,2.96e-22,51;DOID:0060083,2.96e-22,51;DOID:0050687,6.53e-21,143;DOID:1240,3.77e-18,39;DOID:305,8.10e-16,106;DOID:8692,2.71e-14,31 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p1@SKA3 | |short_description=p1@SKA3 | ||
}} | }} |
Latest revision as of 19:47, 16 September 2015
Short description: | p1@SKA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SKA3_5end |
Coexpression cluster: | C109_Reticulocytes_non_acute_Hodgkin_Burkitt_retinoblastoma_lymphoma |
Association with transcript: | 0bp_to_ENST00000298260, ENST00000400018, ENST00000462482, ENST00000465471, uc001unt.2, uc001unu.2, uc001unv.2_5end |
EntrezGene: | SKA3 |
HGNC: | 20262 |
UniProt: | F5H8H7F5GWG1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.83e-16 | 253 |
embryonic cell | 1.39e-09 | 250 |
migratory neural crest cell | 5.67e-08 | 41 |
neurectodermal cell | 8.22e-08 | 59 |
neural cell | 6.47e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cancer | 8.33e-48 | 235 |
disease of cellular proliferation | 9.46e-47 | 239 |
organ system cancer | 7.12e-26 | 137 |
hematologic cancer | 2.96e-22 | 51 |
immune system cancer | 2.96e-22 | 51 |
cell type cancer | 6.53e-21 | 143 |
leukemia | 3.77e-18 | 39 |
carcinoma | 8.10e-16 | 106 |
myeloid leukemia | 2.71e-14 | 31 |