FFCP PHASE1:Hg19::chr5:168728103..168728177,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6586 | |EntrezGene=6586 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11087 | |HGNC=11087 | ||
|TSSclassifier=strong | |||
|UniProt=O75094 | |UniProt=O75094 | ||
|association_with_transcript=0bp_to_ENST00000519560,NM_003062,uc003mab.2,uc010jjg.2,uc010jji.2_5end | |association_with_transcript=0bp_to_ENST00000519560,NM_003062,uc003mab.2,uc010jjg.2,uc010jji.2_5end | ||
|cluster_id=chr5:168728103..168728177,- | |||
|coexpression_cluster_id=C859 | |coexpression_cluster_id=C859 | ||
|description=CAGE_peak_1_at_SLIT3_5end | |description=CAGE_peak_1_at_SLIT3_5end | ||
|id=chr5:168728103..168728177,- | |id=chr5:168728103..168728177,- | ||
|ontology_enrichment_celltype=CL:0000055!1.70e-16!180;CL:0000057!1.70e-15!75;CL:0000136!5.45e-09!15;CL:0002620!6.02e-07!23 | |ontology_enrichment_celltype=CL:0000055!1.70e-16!180;CL:0000057!1.70e-15!75;CL:0000136!5.45e-09!15;CL:0002620!6.02e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0000136;3.35e-08;13!CL:0002620;3.07e-07;23!CL:0000057;8.19e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.65e-16,76;CL:0000136,3.08e-09,15;CL:0002620,3.48e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!8.56e-24!365;UBERON:0007023!3.10e-16!115;UBERON:0000468!2.40e-14!659;UBERON:0000481!1.79e-13!347;UBERON:0000483!1.17e-11!309;UBERON:0000153!1.96e-11!129;UBERON:0007811!1.96e-11!129;UBERON:0004121!2.17e-11!169;UBERON:0000119!3.01e-11!312;UBERON:0000467!5.49e-11!625;UBERON:0000033!5.64e-11!123;UBERON:0003075!8.12e-11!86;UBERON:0007284!8.12e-11!86;UBERON:0000480!9.05e-11!626;UBERON:0000924!3.77e-10!173;UBERON:0006601!3.77e-10!173;UBERON:0003102!4.85e-10!95;UBERON:0000477!3.73e-09!286;UBERON:0002346!4.04e-09!90;UBERON:0000025!9.50e-09!194;UBERON:0004872!1.28e-08!84;UBERON:0004111!1.32e-08!241;UBERON:0000062!1.74e-08!511;UBERON:0000922!3.67e-08!612;UBERON:0002199!4.35e-08!45;UBERON:0002416!4.35e-08!45;UBERON:0007100!7.16e-08!27;UBERON:0000064!1.13e-07!219;UBERON:0000948!1.15e-07!24;UBERON:0005498!1.15e-07!24;UBERON:0004140!1.15e-07!24;UBERON:0009881!1.15e-07!24;UBERON:0004141!1.15e-07!24;UBERON:0003084!1.15e-07!24;UBERON:0007005!1.15e-07!24;UBERON:0004139!1.15e-07!24;UBERON:0004291!1.15e-07!24;UBERON:0001049!1.42e-07!57;UBERON:0005068!1.42e-07!57;UBERON:0006241!1.42e-07!57;UBERON:0007135!1.42e-07!57;UBERON:0002050!1.53e-07!605;UBERON:0005423!1.53e-07!605;UBERON:0000923!2.68e-07!604;UBERON:0005291!2.68e-07!604;UBERON:0006598!2.68e-07!604;UBERON:0002532!2.68e-07!604;UBERON:0003056!8.76e-07!61 | |ontology_enrichment_uberon=UBERON:0000475!8.56e-24!365;UBERON:0007023!3.10e-16!115;UBERON:0000468!2.40e-14!659;UBERON:0000481!1.79e-13!347;UBERON:0000483!1.17e-11!309;UBERON:0000153!1.96e-11!129;UBERON:0007811!1.96e-11!129;UBERON:0004121!2.17e-11!169;UBERON:0000119!3.01e-11!312;UBERON:0000467!5.49e-11!625;UBERON:0000033!5.64e-11!123;UBERON:0003075!8.12e-11!86;UBERON:0007284!8.12e-11!86;UBERON:0000480!9.05e-11!626;UBERON:0000924!3.77e-10!173;UBERON:0006601!3.77e-10!173;UBERON:0003102!4.85e-10!95;UBERON:0000477!3.73e-09!286;UBERON:0002346!4.04e-09!90;UBERON:0000025!9.50e-09!194;UBERON:0004872!1.28e-08!84;UBERON:0004111!1.32e-08!241;UBERON:0000062!1.74e-08!511;UBERON:0000922!3.67e-08!612;UBERON:0002199!4.35e-08!45;UBERON:0002416!4.35e-08!45;UBERON:0007100!7.16e-08!27;UBERON:0000064!1.13e-07!219;UBERON:0000948!1.15e-07!24;UBERON:0005498!1.15e-07!24;UBERON:0004140!1.15e-07!24;UBERON:0009881!1.15e-07!24;UBERON:0004141!1.15e-07!24;UBERON:0003084!1.15e-07!24;UBERON:0007005!1.15e-07!24;UBERON:0004139!1.15e-07!24;UBERON:0004291!1.15e-07!24;UBERON:0001049!1.42e-07!57;UBERON:0005068!1.42e-07!57;UBERON:0006241!1.42e-07!57;UBERON:0007135!1.42e-07!57;UBERON:0002050!1.53e-07!605;UBERON:0005423!1.53e-07!605;UBERON:0000923!2.68e-07!604;UBERON:0005291!2.68e-07!604;UBERON:0006598!2.68e-07!604;UBERON:0002532!2.68e-07!604;UBERON:0003056!8.76e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;7.77e-08;25!UBERON:0000948;1.25e-07;22!UBERON:0004457;7.50e-07;9!UBERON:0000042;7.50e-07;9 | |||
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|phase1_expression=115.365770836803,125.034705952334,139.403905650915,120.087958023756,90.7331021687394,111.659331084847,20.2639902534648,42.9569513930245,147.047508676509,0.737201809504527,0.697801167972428,10.7036272343784,11.3419800638235,0,4.97096063591874,2.6893005858071,1.80808358407193,3.65155045193687,0.975865597581014,12.9277110980627,9.9960338709684,23.8225588323347,6.5834277040143,10.1287074553934,24.7319000001762,0,0,0,0,0,0.154816123316076,1.83884244895785,2.71085326900425,3.32778609150109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.44859552370032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,112.151158504422,6.03630773733273,27.8740384818896,16.2647618573055,25.5682334424304,20.2785126545153,0,2.91980922181582,8.50813354476611,4.87804674417641,7.29028721252946,31.434978119451,6.9216104775583,2.59549109949101,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,2.82653970962005,1.67799774483962,0.275118041940067,1.67195973229448,0,0,0.66944122552934,0,0,0.488124115096339,0,2.43042584364528,0.0892997282840798,0.22452937262617,0.112611480483322,1.53316637465883,0,1.09921046358244,0,0,2.61656431285521,86.4731195949854,44.5739401059321,50.1830795282099,292.286516543041,44.688216156993,54.3857272138038,6.4049397437823,23.6800846480474,65.6655284693507,4.04132016209064,3.26923806226917,3.93529311876822,2.88087962239999,27.4156075245542,9.05264222807929,2.2818872861778,7.32298534703825,8.10298040641978,8.57926605151097,8.42704840213491,8.16616685019573,4.05353247128834,13.4323515528495,35.6400857184616,25.2212267864128,0,0,5.05008341862199,9.00853343078142,12.190821081304,24.5827467693269,15.017901994152,31.3997543114787,4.53728732640084,48.2558120003039,162.51717289093,101.72731255659,27.0081986475962,41.1179591661371,46.1176566681676,61.0463288767615,65.31644057737,44.5287113586678,34.0785595229555,151.606183063867,206.583660614442,48.9913237672928,14.4075500465526,18.4821045618432,3.28543450377605,1.09098448236334,2.29443676311203,1.34171076742555,1.45782745153634,4.88014560051977,8.18922334621426,3.02785021050754,4.37972830890996,15.6449532329816,47.5998294262735,13.8134921352481,37.6138021705903,29.597058748453,0,0,0,0,0,0,0,0,0,0,0,50.2120293824308,30.8718293909638,0,0,0,0,0,6.51957679134397,17.5600456653801,10.1161577931858,0.904760751704678,3.61094936118265,25.7388561195157,11.4392826380754,5.77325368101093,12.2886229273581,3.63966952131047,0.288732895522148,0,0,0,0,0,0,0,0.93733833986777,3.52762469217605,0.567100388969546,3.58234090811393,3.19697332365358,10.3513323374607,0,0,4.76854665743776,4.17947864909188,4.54472760334968,0,0,0,15.3965201420435,1.33675740514321,0,0,1.12131084345361,0,0.22001485746285,29.4739511927733,14.3062578340753,1.690605505112,2.92531928243358,1.04007436911366,4.8869401109807,1.41849132023278,2.66422179016099,7.72081165753997,103.640726629766,7.40916303102692,0,4.97548728239564,1.58390374586686,135.949159053873,37.4759387198126,95.2742605965004,0,0,0,5.75099653179798,8.04033550838797,0,2.02693829334611,8.21905290201534,0.179060963239896,0,0,0,0,0,0,0,0.335032530668698,0.637938751653163,0,0,0,1.10422342547226,2.00068208423871,1.35632511849868,19.3412901223651,17.3076119133247,19.0819922191061,30.6910507280909,30.3955560724996,15.9185252839189,15.5209606938757,13.2845119707087,9.95593510125197,15.2915161463826,11.356467132839,4.11772108573027,0,0,0,1.5156378572313,23.3009615314696,22.9816622930557,203.200294603578,108.651077087948,158.01163316582,175.935051928077,111.040473047475,75.1187811740647,143.965524451641,5.70575867069826,29.8303698526053,16.343304046748,0,20.4530266089528,0,9.02279116364782,16.2062540527178,0.229628896329213,0,0.262248829918848,1.35359883872224,1.5403067420883,3.92174884588428,2.92278449306521,3.0609972378934,0,0,2.37507507712353,4.62681758070868,9.212178876491,11.5388647986616,0,0,1.79099803777743,0,0,8.46285412884084,38.3777135468656,13.991270970565,26.8937040400555,18.7717402877604,16.5018999841176,23.5448870578431,13.0012049207304,3.21367859688319,6.67027956215642,0.924291702687866,2.14905144616581,0.551346289938122,1.28904293841928,4.64053420525531,1.19317278382541,11.9302927766628,5.61968712227326,11.7235941092715,6.76347376221296,25.1882874330319,19.0586675211887,118.369442408321,11.8496335927302,30.8033580176089,12.2430386972915,13.9189278732012,54.2999961974486,15.3143628813931,0,2.21465597303108,0.953150969619124,6.65334257409468,9.41465773674625,59.1858041142242,11.7742296029885,3.23770423649967,9.60879604076192,2.23843564456804,18.8029707863184,47.5530963519025,18.1141136182762,0,5.60541026151954,11.6215161432431,1.22849920267187,0.707027159768564,44.0731654818947,72.7802253480884,31.8450708115785,46.9142447221526,4.05142873986681,1.31178950409327,26.9870801360396,12.39293992399,13.5213889215476,6.31009949697827,7.56517615801033,20.3302499344313,0.354761064070598,186.830257238433,217.005334460575,10.2457756916743,16.44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| ||
|short_description=p1@SLIT3 | |short_description=p1@SLIT3 | ||
}} | }} |
Latest revision as of 20:33, 16 September 2015
Short description: | p1@SLIT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLIT3_5end |
Coexpression cluster: | C859_Fibroblast_Synoviocyte_Preadipocyte_mesothelioma_tenocyte_Mesothelial_Smooth |
Association with transcript: | 0bp_to_ENST00000519560, NM_003062, uc003mab.2, uc010jjg.2, uc010jji.2_5end |
EntrezGene: | SLIT3 |
HGNC: | 11087 |
UniProt: | O75094 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.65e-16 | 76 |
fat cell | 3.08e-09 | 15 |
skin fibroblast | 3.48e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.47e-17 | 132 |
adult organism | 4.40e-17 | 114 |
ecto-epithelium | 3.49e-11 | 104 |
neural plate | 1.86e-10 | 82 |
presumptive neural plate | 1.86e-10 | 82 |
ectoderm-derived structure | 1.12e-09 | 171 |
ectoderm | 1.12e-09 | 171 |
presumptive ectoderm | 1.12e-09 | 171 |
epithelium | 4.30e-09 | 306 |
surface structure | 6.91e-09 | 99 |
neurectoderm | 7.14e-09 | 86 |
cell layer | 1.18e-08 | 309 |
integument | 2.26e-08 | 46 |
integumental system | 2.26e-08 | 46 |
primary circulatory organ | 4.40e-08 | 27 |
heart | 7.17e-08 | 24 |
primitive heart tube | 7.17e-08 | 24 |
primary heart field | 7.17e-08 | 24 |
anterior lateral plate mesoderm | 7.17e-08 | 24 |
heart tube | 7.17e-08 | 24 |
heart primordium | 7.17e-08 | 24 |
cardiac mesoderm | 7.17e-08 | 24 |
cardiogenic plate | 7.17e-08 | 24 |
heart rudiment | 7.17e-08 | 24 |
tube | 1.08e-07 | 192 |
splanchnic layer of lateral plate mesoderm | 1.13e-07 | 83 |
neural tube | 2.18e-07 | 56 |
neural rod | 2.18e-07 | 56 |
future spinal cord | 2.18e-07 | 56 |
neural keel | 2.18e-07 | 56 |
anatomical conduit | 2.56e-07 | 240 |
regional part of nervous system | 2.57e-07 | 53 |
regional part of brain | 2.57e-07 | 53 |
skin of body | 6.63e-07 | 41 |