FFCP PHASE1:Hg19::chr16:50715635..50715648,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=124460 | |EntrezGene=124460 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=30390 | |HGNC=30390 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=Q7Z614 | |UniProt=Q7Z614 | ||
|association_with_transcript=-371bp_to_ENST00000300590,ENST00000413750,ENST00000423026,NM_001144972,NM_153337,NM_182854,uc002egi.3,uc002egk.2,uc010vgp.1_5end | |association_with_transcript=-371bp_to_ENST00000300590,ENST00000413750,ENST00000423026,NM_001144972,NM_153337,NM_182854,uc002egi.3,uc002egk.2,uc010vgp.1_5end | ||
|cluster_id=chr16:50715635..50715648,- | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_6_at_SNX20_5end | |description=CAGE_peak_6_at_SNX20_5end | ||
Latest revision as of 21:05, 16 September 2015
| Short description: | p6@SNX20 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_6_at_SNX20_5end |
| Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
| Association with transcript: | -371bp_to_ENST00000300590, ENST00000413750, ENST00000423026, NM_001144972, NM_153337, NM_182854, uc002egi.3, uc002egk.2, uc010vgp.1_5end |
| EntrezGene: | SNX20 |
| HGNC: | 30390 |
| UniProt: | Q7Z614 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p6@SNX20 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| classical monocyte | 6.81e-79 | 42 |
| CD14-positive, CD16-negative classical monocyte | 6.81e-79 | 42 |
| defensive cell | 1.01e-68 | 48 |
| phagocyte | 1.01e-68 | 48 |
| macrophage dendritic cell progenitor | 1.45e-64 | 61 |
| monopoietic cell | 1.83e-60 | 59 |
| monocyte | 1.83e-60 | 59 |
| monoblast | 1.83e-60 | 59 |
| promonocyte | 1.83e-60 | 59 |
| granulocyte monocyte progenitor cell | 1.22e-58 | 67 |
Showing 1 to 10 of 29 entries
| Ontology term | p-value | n |
|---|---|---|
| bone marrow | 1.74e-51 | 76 |
| bone element | 1.41e-47 | 82 |
| skeletal element | 3.66e-43 | 90 |
| immune system | 1.06e-41 | 93 |
| hematopoietic system | 1.84e-39 | 98 |
| blood island | 1.84e-39 | 98 |
| skeletal system | 1.26e-38 | 100 |
| hemolymphoid system | 1.35e-35 | 108 |
| musculoskeletal system | 3.97e-22 | 167 |
| lateral plate mesoderm | 1.01e-17 | 203 |
Showing 1 to 10 of 14 entries
