FFCP PHASE1:Hg19::chr8:144640566..144640575,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79792 | |EntrezGene=79792 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25697 | |HGNC=25697 | ||
|TSSclassifier=strong | |||
|UniProt=E9PIB2 | |UniProt=E9PIB2 | ||
|association_with_transcript=25bp_to_ENST00000534018_5end | |association_with_transcript=25bp_to_ENST00000534018_5end | ||
|cluster_id=chr8:144640566..144640575,+ | |||
|description=CAGE_peak_4_at_GSDMD_5end | |description=CAGE_peak_4_at_GSDMD_5end | ||
|id=chr8:144640566..144640575,+ | |id=chr8:144640566..144640575,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000764;2.60e-07;2!CL:0000558;2.60e-07;2!CL:0000182;7.05e-07;12 | |ontology_enrichment_celltype_v019=CL:0000764;2.60e-07;2!CL:0000558;2.60e-07;2!CL:0000182;7.05e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000764,4.38e-07,2;CL:0000765,4.38e-07,2;CL:0000050,4.38e-07,2;CL:0000038,4.38e-07,2;CL:0000558,4.38e-07,2;CL:0000547,4.38e-07,2;CL:0000549,4.38e-07,2;CL:0000550,4.38e-07,2;CL:0000552,4.38e-07,2;CL:0000182,4.59e-07,12 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3493;2.60e-07;2 | |ontology_enrichment_disease_v019=DOID:3493;2.60e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3493,2.03e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001007!3.74e-08!155;UBERON:0001555!3.74e-08!155;UBERON:0007026!3.74e-08!155;UBERON:0004921!5.25e-08!129;UBERON:0004185!5.25e-08!129;UBERON:0000077!4.85e-07!130;UBERON:0001041!8.49e-07!98 | |ontology_enrichment_uberon=UBERON:0001007!3.74e-08!155;UBERON:0001555!3.74e-08!155;UBERON:0007026!3.74e-08!155;UBERON:0004921!5.25e-08!129;UBERON:0004185!5.25e-08!129;UBERON:0000077!4.85e-07!130;UBERON:0001041!8.49e-07!98 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;4.13e-10;19!UBERON:0006925;4.13e-10;19!UBERON:0005172;9.82e-08;52!UBERON:0005173;9.82e-08;52!UBERON:0002423;2.39e-07;25!UBERON:0004909;2.60e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0002107;4.13e-10;19!UBERON:0006925;4.13e-10;19!UBERON:0005172;9.82e-08;52!UBERON:0005173;9.82e-08;52!UBERON:0002423;2.39e-07;25!UBERON:0004909;2.60e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.57e-10,19;UBERON:0006925,2.57e-10,19;UBERON:0008836,2.57e-10,19;UBERON:0005172,2.62e-10,54;UBERON:0005173,2.62e-10,54;UBERON:0002417,6.25e-09,60;UBERON:0000916,6.25e-09,60;UBERON:0008835,1.03e-08,22;UBERON:0003894,1.03e-08,22;UBERON:0009854,2.84e-08,23;UBERON:0004921,6.77e-08,118;UBERON:0007499,1.69e-07,25;UBERON:0009497,1.69e-07,25;UBERON:0000015,1.69e-07,25;UBERON:0002423,1.69e-07,25;UBERON:0006235,1.69e-07,25;UBERON:0004161,1.69e-07,25;UBERON:0004909,2.80e-07,2;UBERON:0009856,3.71e-07,26;UBERON:0005177,4.15e-07,101;UBERON:0001041,6.38e-07,87 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0.261185628199839,0.245733936501509,1.39560233594486,0,0.263766978228454,0.37129905888014,0,0,0,0,0,0.123121058076788,0.204000691244253,0.626909442956176,0,0,0,0.305653622991805,0.246301768349837,0.0787107813136792,0.393364276848904,0.383829398097213,0.154816123316076,0.919421224478927,0,0.369754010166788,0.0774672005803016,0,0,0,0,0,0.223915474239924,0.32389366601898,1.28787783817093,0.872389432677388,0.377875943688809,0.242584061187816,0.232429036905685,0,0,2.3015391385772,0.768482119587302,0.945928919554341,0.689491361473237,0,0,0.376484679085209,0,0.449446968890169,1.53041946185451,0,0,1.31940520074686,0.997318288108159,1.70489900213078,0.580418477257168,0,0,1.50749199154046,0,1.08594422352558,1.81619850790011,0.368277635987565,0,0,1.27562579979026,0.419317291016752,0.336985893439485,0.901061357049038,0.32145117339416,0.570025487482497,0.79566670879636,0.365328307529268,0,0,0,0,0.800791974072025,0.574752439954483,0,0,0,0,0.382273228125229,0,0,0.526768169550154,0,0.393010762749165,0.205601498999509,0.501559486172034,0.32592226663359,0,0,1.00269411196656,0.589211814949674,0.443067789167242,0.270803863765016,0.25618263945135,1.30059347559878,0.164437904603676,0.276350017785848,0,0,0,0,0.793165398882963,0.766440987203842,0.68725489096526,0.506039384039006,0.95569624297229,0.651083453856419,0,0.150575119077773,0,0,0.236777252044017,0,0,0.267440195783507,0.144824403882799,0,0.670700859703636,0.12786256184353,0.361439152384566,1.00267582127178,0.289693037921647,0,0.486634870302636,0,0.221729397462564,0.263504357079378,0.392937226493138,0,0.370784442784429,0.649094787309367,0,0.132957960518865,0.238490624305342,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0.760272105718513,0.24406205754817,0.367663080345869,0,0.17859945656816,0.22452937262617,0.112611480483322,0,0,0,0,3.87780264148325,0.436094052142534,0.496971951695318,0,0.132409180813219,0.573673241497627,0,0,0,0,0,0,0.163461903113459,0,0,0,0.312160076830321,0,0,0,0,0,0.204154171254893,0.245668634623536,0,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0.30648779579902,0.600952235626387,0,0,0.213557388818567,0.211931901159562,0.300091096084402,0.103052529238439,0.515281080091258,0.18611685633159,0.168776332241266,0.0974370051611986,0.504867548488229,0,0.161646056818812,0.355009592516614,0,0,0,0,0.286804595389004,0.121973706129595,0.265059536642971,0.464775771478074,0.207322110030741,0,0,1.56449532329816,0,0,0,0,0.236613600079688,0.505754070234305,0.482022059766964,0.330881918197182,0.435758888184812,0.474541238222193,0.404493924480493,0.392442930250692,0,2.21446636387394,0,0.8231480226628,1.47008711385542,3.80265104465493,1.96565443335525,2.95394953340702,0.441463099414651,0.368965315629341,0.171567810298526,0.109750285408626,0,0.100528972411631,0,0,1.03993478527958,0,0.115930404975077,0.117408694235822,2.30986316417718,1.85194205030644,4.37584550139576,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0.0895585227028483,0.290633938513962,0.383382679165211,0,0.176096868026452,0,0.144119953416961,0,0,0,0,0,0.102827492703324,0.300343057843917,0,0,0,0,0.387815147273333,0,0,0,0,0.257207374262142,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0.871533458600294,0,1.2162378064119,0,0,0,0,0,0,0,0,0.336255431980582,0.197030760201927,0.215627574859517,0.128343036279748,0,0,0,0,0,0.749007023947182,0,1.24324654030811,0.12269149171914,1.50051156317903,0.271265023699736,0.207970861530807,0.356857977594324,0.315404830067869,0.234282829985426,0,0,0,0,0.184369168541703,0.0868836144680828,0.195801157462741,0,0.413536052245775,0,0.320182673410333,0,0,0,0.248107807818777,0.153461973288062,0,0.128139149255701,0,0,0,0,0.355123450626254,0.0821271560138091,0,0.232420756919918,0.120859449591622,0.601519410909855,0,0.229628896329213,0,0.262248829918848,0,0.0770153371044148,3.92174884588428,0,0.105551628892876,0,0.170093705276516,0.647747748306418,3.08454505380579,0.541892875087706,0,0.254876273045038,0,1.11937377361089,1.09629938322967,1.3071772551245,0,0.328014645699706,0,0.618246069886334,0.27470839445503,0.247528499761764,0,0,1.6068392984416,0.096670718292122,0.308097234229289,0,0.137836572484531,0.214840489736547,0.435050081742686,0,0.178064071293475,0,0,0.255225424989168,0,0,0,0,0.924100740528266,0,0,0,0,0,0.632758849437452,0,0,0,0.95460974377781,0.78494864019923,0,0.274537029736055,0,0,0,0,0,0.974853958525138,0,0.136499911407986,0.282810863907425,2.26016233240486,0.551365343546124,0,0,0,0,0,0,0.281695602532241,0,0.0982490410131212,0.35667105148125,0,0.844430541190656,0,0,0.699869440489966,0.288666338176536,0,1.08890984861323,0.470719003883896,0,0,0,0,1.52234282769651,3.0585488285695,0.569647187174163,0.238231775457789,0.411362273086194,0.648473311192717,0.540031437238115,0.79312517629427,0,0,0.490080431962063,0.185803175125719,0.432807638929335,0.0711418433484141,0,0.199579371432817,0.191505370132367,0,0.324621940274555,0,0.456469358066384,0,0,0.846458889008016,0,0,0,0,0.30724076430845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| ||
|short_description=p4@GSDMD | |short_description=p4@GSDMD | ||
}} | }} |
Latest revision as of 22:32, 16 September 2015
Short description: | p4@GSDMD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GSDMD_5end |
Coexpression cluster: | NA |
Association with transcript: | 25bp_to_ENST00000534018_5end |
EntrezGene: | GSDMD |
HGNC: | 25697 |
UniProt: | E9PIB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 4.38e-07 | 2 |
erythroblast | 4.38e-07 | 2 |
megakaryocyte-erythroid progenitor cell | 4.38e-07 | 2 |
erythroid progenitor cell | 4.38e-07 | 2 |
reticulocyte | 4.38e-07 | 2 |
proerythroblast | 4.38e-07 | 2 |
basophilic erythroblast | 4.38e-07 | 2 |
polychromatophilic erythroblast | 4.38e-07 | 2 |
orthochromatic erythroblast | 4.38e-07 | 2 |
hepatocyte | 4.59e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 2.57e-10 | 19 |
digestive gland | 2.57e-10 | 19 |
liver bud | 2.57e-10 | 19 |
abdomen element | 2.62e-10 | 54 |
abdominal segment element | 2.62e-10 | 54 |
abdominal segment of trunk | 6.25e-09 | 60 |
abdomen | 6.25e-09 | 60 |
hepatic diverticulum | 1.03e-08 | 22 |
liver primordium | 1.03e-08 | 22 |
digestive tract diverticulum | 2.84e-08 | 23 |
subdivision of digestive tract | 6.77e-08 | 118 |
epithelial sac | 1.69e-07 | 25 |
epithelium of foregut-midgut junction | 1.69e-07 | 25 |
anatomical boundary | 1.69e-07 | 25 |
hepatobiliary system | 1.69e-07 | 25 |
foregut-midgut junction | 1.69e-07 | 25 |
septum transversum | 1.69e-07 | 25 |
epithelium of gonad | 2.80e-07 | 2 |
sac | 3.71e-07 | 26 |
trunk region element | 4.15e-07 | 101 |
foregut | 6.38e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 2.03e-07 | 2 |