FFCP PHASE1:Hg19::chr1:246580662..246580673,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64754 | |EntrezGene=64754 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15513 | |HGNC=15513 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=37bp_to_uc001ibk.2_5end | |association_with_transcript=37bp_to_uc001ibk.2_5end | ||
|cluster_id=chr1:246580662..246580673,- | |||
|coexpression_cluster_id=C2577 | |coexpression_cluster_id=C2577 | ||
|description=CAGE_peak_5_at_SMYD3_5end | |description=CAGE_peak_5_at_SMYD3_5end | ||
|id=chr1:246580662..246580673,- | |id=chr1:246580662..246580673,- | ||
|ontology_enrichment_celltype=CL:0000055!1.42e-14!180;CL:0002334!1.64e-11!12;CL:0000057!1.98e-10!75;CL:0000133!1.43e-08!59;CL:0002319!6.57e-08!25;CL:0002620!1.09e-07!23;CL:0000243!7.90e-07!15;CL:0000125!7.90e-07!15;CL:0000030!7.90e-07!15;CL:0000339!7.90e-07!15;CL:0000569!9.95e-07!4;CL:0000011!9.95e-07!4 | |ontology_enrichment_celltype=CL:0000055!1.42e-14!180;CL:0002334!1.64e-11!12;CL:0000057!1.98e-10!75;CL:0000133!1.43e-08!59;CL:0002319!6.57e-08!25;CL:0002620!1.09e-07!23;CL:0000243!7.90e-07!15;CL:0000125!7.90e-07!15;CL:0000030!7.90e-07!15;CL:0000339!7.90e-07!15;CL:0000569!9.95e-07!4;CL:0000011!9.95e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000077;3.39e-10;19!CL:0000047;1.30e-09;2!CL:0002570;4.27e-09;8!CL:0000048;8.53e-08;58!CL:0002540;3.72e-07;6!CL:0002092;4.25e-07;10!CL:0000723;5.09e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,3.99e-10,19;CL:0002570,5.34e-09,8;CL:0002540,3.15e-07,6;CL:0002092,4.12e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!7.08e-08!14 | |ontology_enrichment_disease=DOID:2394!7.08e-08!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.30e-09;2!UBERON:0002757;1.30e-09;2!UBERON:0010134;1.30e-09;2!UBERON:0005408;1.30e-09;2!UBERON:0001899;1.30e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.10e-09,2;UBERON:0002757,2.10e-09,2;UBERON:0010134,2.10e-09,2;UBERON:0005408,2.10e-09,2;UBERON:0001899,2.10e-09,2 | |||
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| ||
|short_description=p5@SMYD3 | |short_description=p5@SMYD3 | ||
}} | }} |
Latest revision as of 22:41, 16 September 2015
Short description: | p5@SMYD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SMYD3_5end |
Coexpression cluster: | C2577_mesenchymal_Fibroblast_Mesothelial_anaplastic_glioma_Preadipocyte_liposarcoma |
Association with transcript: | 37bp_to_uc001ibk.2_5end |
EntrezGene: | SMYD3 |
HGNC: | 15513 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 3.99e-10 | 19 |
mesenchymal stem cell of adipose | 5.34e-09 | 8 |
mesenchymal stem cell of the bone marrow | 3.15e-07 | 6 |
bone marrow cell | 4.12e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
pineal body | 2.10e-09 | 2 |
regional part of epithalamus | 2.10e-09 | 2 |
secretory circumventricular organ | 2.10e-09 | 2 |
circumventricular organ | 2.10e-09 | 2 |
epithalamus | 2.10e-09 | 2 |