FFCP PHASE1:Hg19::chr4:183065793..183065864,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55714 | |EntrezGene=55714 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29944 | |HGNC=29944 | ||
|TSSclassifier=strong | |||
|UniProt=D6RGC5 | |UniProt=D6RGC5 | ||
|association_with_transcript=0bp_to_ENST00000512480_5end | |association_with_transcript=0bp_to_ENST00000512480_5end | ||
|cluster_id=chr4:183065793..183065864,+ | |||
|description=CAGE_peak_2_at_ODZ3_5end | |description=CAGE_peak_2_at_ODZ3_5end | ||
|id=chr4:183065793..183065864,+ | |id=chr4:183065793..183065864,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.09e-17!180;CL:0000221!1.46e-10!71;CL:0000095!6.97e-10!17;CL:0000123!6.97e-10!17;CL:0000133!9.59e-10!59;CL:0000057!3.75e-09!75;CL:0002319!5.31e-09!25;CL:0000243!9.44e-09!15;CL:0000125!9.44e-09!15;CL:0000030!9.44e-09!15;CL:0000339!9.44e-09!15;CL:0000333!7.54e-08!41;CL:0000035!5.68e-07!20 | |ontology_enrichment_celltype=CL:0000055!3.09e-17!180;CL:0000221!1.46e-10!71;CL:0000095!6.97e-10!17;CL:0000123!6.97e-10!17;CL:0000133!9.59e-10!59;CL:0000057!3.75e-09!75;CL:0002319!5.31e-09!25;CL:0000243!9.44e-09!15;CL:0000125!9.44e-09!15;CL:0000030!9.44e-09!15;CL:0000339!9.44e-09!15;CL:0000333!7.54e-08!41;CL:0000035!5.68e-07!20 | ||
|ontology_enrichment_celltype_v019=CL:0000095;1.63e-11;17!CL:0000243;3.71e-10;15!CL:0000125;3.71e-10;15!CL:0002319;1.85e-09;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000095,1.79e-11,17;CL:0000123,1.79e-11,17;CL:0000243,3.97e-10,15;CL:0000125,3.97e-10,15;CL:0000030,3.97e-10,15;CL:0000339,3.97e-10,15;CL:0000221,1.60e-09,72;CL:0002319,2.15e-09,25;CL:0000133,3.05e-09,59;CL:0000057,6.27e-09,76;CL:0000333,2.26e-08,41 | |||
|ontology_enrichment_development_v019=CL:0000339;3.71e-10;15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.09e-10!365;UBERON:0004121!1.31e-07!169;UBERON:0000478!2.11e-07!24;UBERON:0000924!7.46e-07!173;UBERON:0006601!7.46e-07!173 | |ontology_enrichment_uberon=UBERON:0000475!1.09e-10!365;UBERON:0004121!1.31e-07!169;UBERON:0000478!2.11e-07!24;UBERON:0000924!7.46e-07!173;UBERON:0006601!7.46e-07!173 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.15e-08;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000478,6.44e-09,24;UBERON:0005631,6.48e-07,14;UBERON:0000158,6.48e-07,14 | |||
|phase1_expression=4.90531624030503,4.06790995392868,4.08767771878316,4.00293193412522,0.893922188854576,0,2.53299878168311,5.68547886084148,0.261185628199839,0.982935746006035,0,8.95609625733706,11.078213085595,0.247532705920093,1.32558950291166,2.6893005858071,3.01347264011988,5.11217063271161,4.39139518911456,4.30923703268758,5.71201935483908,3.44800193625897,2.57612388417951,6.15934912827979,5.39833350257652,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,0,0.50133791063589,0.144846518960824,0,0,26.0916095372827,18.4035399893928,28.9854792787316,0.589405839739707,0.364295288292542,2.59549109949101,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0.496971951695318,0,4.10468460520978,3.15520282823695,1.41867352879343,0,1.06748995729705,1.72667283892012,0,0.67355336034844,0.653847612453835,1.66493170409425,2.30470369792,1.40592859100278,0.624320153660641,0,0.747243402759005,1.64408298101271,2.91371299862637,2.52811452064047,0.204154171254893,0.245668634623536,0.309977343527296,2.37600571456411,1.48360157567134,6.37112953356618,2.15585442544872,0.505008341862199,0.750711119231785,0,3.95079858792754,2.14541457059314,3.45547535485173,0.340296549480063,22.7824837324855,5.55249210928275,2.54318281391474,16.8051013807265,4.32820622801443,11.3361837620077,4.65292140828975,124.388156861813,33.9080777960971,35.340728394176,4.14224543890347,0.161646056818812,61.4166595053743,22.0647095118532,2.54340888465731,4.44499962275583,3.00020732649918,2.00763216772303,1.82960559194393,2.78312513475119,3.60201222895507,4.5610864206763,4.03713361401005,9.85438869504741,4.69348596989448,1.28648187638577,0,6.03678306441573,2.88751792667834,1.18306800039844,0.842923450390509,2.16909926895134,0.661763836394364,1.52515610864684,0.949082476444386,0.674156540800822,0.784885860501384,0,0,0,0,2.94017422771084,0,0,0,0,4.18160691046586,3.25978839567199,0.548751427043128,2.24803506515239,0.804231779293047,2.12953423864618,0.651616610620649,0,8.6598805215164,5.79652024875384,9.7449216215732,0,0,0,4.74122638775565,0.858486162094873,0,0,0,2.81201501960331,4.36753533317035,1.98485136139341,3.58234090811393,3.19697332365358,5.36735750831296,0.492663237895943,0,0,0,0,0.063497894292169,1.90994212779139,1.17217447210047,0,1.54241239054985,0,0.857479297891735,0.672786506072164,0,0.2933531432838,2.71470603091333,3.57656445851882,4.22651376278,2.6593811658487,3.12022310734098,1.28603687131071,1.41849132023278,2.1313774321288,1.00084595560703,0,4.93944202068461,2.93162565864362,0.710783897485092,3.16780749173372,4.82303003295338,2.61460037580088,7.29802835629016,0,0,0,1.67737398844108,0,7.13184525203592,3.18518874668674,2.05476322550383,7.69962141931551,0,0,0,0,0.508189248444927,0,1.54657762555539,0.335032530668698,0.637938751653163,0,0,0,2.08575535922538,0.500170521059677,1.08506009479894,1.24782516918484,0.535286966391485,1.26161932027148,0.937131319941706,1.20378439891088,2.27407504055985,3.10419213877515,8.63493278096067,7.19039757312642,0,0,0.343143423810856,0,0,0,3.33440328590885,1.66435439510497,6.95497674658265,3.96972492510043,45.1178201466904,17.6815859492836,5.50998341799514,10.2341449813341,4.02134802859019,0,4.1636617326717,3.01854933032316,5.17401082886998,0.519254429183621,6.2753604368378,8.09758312263869,0.40101294060657,1.74953878978203,3.21480454860899,0,0,1.35359883872224,0.847168708148562,1.56869953835371,1.46139224653261,0.527758144464379,0,0,3.02282282542995,0,1.89662506280697,4.01351819083883,0.509752546090077,0,1.56712328305525,0,0,0,0.328014645699706,0,2.67906630284078,13.2775723986598,10.7262349896764,0,0.650060246036521,3.21367859688319,1.16004861950546,9.7050628782226,8.44270210993712,5.78913604435028,7.30457665104261,9.57110179833908,6.90335682070417,3.82837753280971,0,0,0,0,0,0,0,0,0,0,1.66791797193528,0,0.744316738719335,1.58189712359363,3.0500831027812,0.767693373934002,2.99557291623744,1.27281299170375,0,1.61885211824983,2.74537029736055,2.12062324222236,0,0,0.421258456238981,0.975267478179181,0,0,0,0.989838023675989,2.26016233240486,0.551365343546124,0,0,2.31510213706675,0.655894752046633,0.608731130888112,1.54911749049875,0.563391205064483,2.72481569187698,1.96498082026242,1.07001315444375,0.709522128141196,0.211107635297664,0.329294892959902,0.75894634753143,0.349934720244983,0.192444225451024,0.670302275535787,0,2.35359501941948,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0.879049075631364,3.03401304373784,0,0,1.90995587790152,11.2846578716403,2.45728561679386,0,0.562677665642051,1.66963057534359,23.2373462659731,0,0.597743964753209,0.552567831062295,0,54.816013821155,0,0.933118762985422,3.2352606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| ||
|short_description=p2@ODZ3 | |short_description=p2@ODZ3 | ||
}} | }} |
Latest revision as of 23:40, 16 September 2015
Short description: | p2@ODZ3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ODZ3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000512480_5end |
EntrezGene: | ODZ3 |
HGNC: | 29944 |
UniProt: | D6RGC5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron associated cell | 1.79e-11 | 17 |
neuron associated cell (sensu Vertebrata) | 1.79e-11 | 17 |
glial cell (sensu Vertebrata) | 3.97e-10 | 15 |
glial cell | 3.97e-10 | 15 |
glioblast | 3.97e-10 | 15 |
glioblast (sensu Vertebrata) | 3.97e-10 | 15 |
ectodermal cell | 1.60e-09 | 72 |
neural cell | 2.15e-09 | 25 |
neurectodermal cell | 3.05e-09 | 59 |
fibroblast | 6.27e-09 | 76 |
migratory neural crest cell | 2.26e-08 | 41 |
Ontology term | p-value | n |
---|---|---|
extraembryonic structure | 6.44e-09 | 24 |
extraembryonic membrane | 6.48e-07 | 14 |
membranous layer | 6.48e-07 | 14 |