FFCP PHASE1:Hg19::chr11:17565934..17565939,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10083 | |EntrezGene=10083 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12597 | |HGNC=12597 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=7bp_to_ENST00000527020_5end | |association_with_transcript=7bp_to_ENST00000527020_5end | ||
|cluster_id=chr11:17565934..17565939,- | |||
|coexpression_cluster_id=C579 | |||
|description=CAGE_peak_8_at_USH1C_5end | |description=CAGE_peak_8_at_USH1C_5end | ||
|id=chr11:17565934..17565939,- | |id=chr11:17565934..17565939,- | ||
|ontology_enrichment_celltype=CL:0002150!1.00e-11!3;CL:0000861!1.00e-11!3 | |ontology_enrichment_celltype=CL:0002150!1.00e-11!3;CL:0000861!1.00e-11!3 | ||
|ontology_enrichment_celltype_v019=CL:0002535;1.48e-12;2!CL:0002231;1.35e-08;3!CL:0002563;9.36e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,1.48e-12,2;CL:0002231,1.40e-08,3;CL:0002563,9.11e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0006242;4.58e-23;1!UBERON:0004161;6.61e-09;11!UBERON:0009497;1.13e-07;13 | |||
|ontology_enrichment_disease=DOID:3493!1.54e-08!2;DOID:4929!1.72e-08!2;DOID:305!2.58e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:3493;1.96e-12;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,2.07e-12,2 | |||
|ontology_enrichment_uberon=UBERON:0005409!3.90e-18!35;UBERON:0000160!5.47e-18!27;UBERON:0007023!4.76e-14!115;UBERON:0001049!5.03e-14!57;UBERON:0005068!5.03e-14!57;UBERON:0006241!5.03e-14!57;UBERON:0007135!5.03e-14!57;UBERON:0000059!1.48e-12!11;UBERON:0002616!1.03e-11!59;UBERON:0002780!1.14e-11!41;UBERON:0001890!1.14e-11!41;UBERON:0006240!1.14e-11!41;UBERON:0003080!2.47e-11!42;UBERON:0001155!6.33e-11!9;UBERON:0002791!1.33e-10!33;UBERON:0002020!2.55e-10!34;UBERON:0003528!2.55e-10!34;UBERON:0001893!3.07e-10!34;UBERON:0001017!1.11e-09!82;UBERON:0000955!2.37e-09!69;UBERON:0006238!2.37e-09!69;UBERON:0003075!3.29e-09!86;UBERON:0007284!3.29e-09!86;UBERON:0005743!4.64e-09!86;UBERON:0002294!7.27e-09!7;UBERON:0001173!7.27e-09!7;UBERON:0004912!7.27e-09!7;UBERON:0000062!1.15e-08!511;UBERON:0002346!1.24e-08!90;UBERON:0000073!7.38e-08!94;UBERON:0001016!7.38e-08!94;UBERON:0004907!8.70e-08!5;UBERON:0002298!1.19e-07!8;UBERON:0000481!1.31e-07!347;UBERON:0001950!1.82e-07!20;UBERON:0001869!2.86e-07!32;UBERON:0004921!4.38e-07!129;UBERON:0004185!4.38e-07!129;UBERON:0003056!4.77e-07!61;UBERON:0002308!8.65e-07!9;UBERON:0000125!8.65e-07!9;UBERON:0002619!9.73e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;2.38e-40;4!UBERON:0000160;5.22e-20;17!UBERON:0005409;9.12e-16;22!UBERON:0006955;1.48e-12;2!UBERON:0004801;1.48e-12;2!UBERON:0004921;2.20e-09;33!UBERON:0002114;1.00e-08;2!UBERON:0002110;1.35e-08;3!UBERON:0001242;9.36e-07;4!UBERON:0001262;9.36e-07;4!UBERON:0004786;9.36e-07;4!UBERON:0004808;9.36e-07;4!UBERON:0001277;9.36e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,2.23e-40,4;UBERON:0000160,4.97e-20,17;UBERON:0005409,5.15e-14,25;UBERON:0006955,1.48e-12,2;UBERON:0004801,1.48e-12,2;UBERON:0002114,8.96e-09,2;UBERON:0002110,1.21e-08,3;UBERON:0006242,1.21e-08,3;UBERON:0001007,3.19e-07,145;UBERON:0001555,3.19e-07,145;UBERON:0007026,3.19e-07,145;UBERON:0003929,7.63e-07,54;UBERON:0001242,9.11e-07,4;UBERON:0001262,9.11e-07,4;UBERON:0004786,9.11e-07,4;UBERON:0004808,9.11e-07,4;UBERON:0001277,9.11e-07,4 | |||
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| ||
|short_description=p8@USH1C | |short_description=p8@USH1C | ||
}} | }} |
Latest revision as of 00:31, 17 September 2015
Short description: | p8@USH1C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_USH1C_5end |
Coexpression cluster: | C579_small_argyrophil_colon_duodenum_signet_temporal_Intestinal |
Association with transcript: | 7bp_to_ENST00000527020_5end |
EntrezGene: | USH1C |
HGNC: | 12597 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 1.48e-12 | 2 |
epithelial cell of prostate | 1.40e-08 | 3 |
intestinal epithelial cell | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
small intestine | 2.23e-40 | 4 |
intestine | 4.97e-20 | 17 |
gastrointestinal system | 5.15e-14 | 25 |
uterine epithelium | 1.48e-12 | 2 |
cervix epithelium | 1.48e-12 | 2 |
duodenum | 8.96e-09 | 2 |
gallbladder | 1.21e-08 | 3 |
gall bladder primordium | 1.21e-08 | 3 |
digestive system | 3.19e-07 | 145 |
digestive tract | 3.19e-07 | 145 |
primitive gut | 3.19e-07 | 145 |
gut epithelium | 7.63e-07 | 54 |
intestinal mucosa | 9.11e-07 | 4 |
wall of intestine | 9.11e-07 | 4 |
gastrointestinal system mucosa | 9.11e-07 | 4 |
gastrointestinal system epithelium | 9.11e-07 | 4 |
intestinal epithelium | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 2.07e-12 | 2 |