FFCP PHASE1:Hg19::chr11:1946080..1946081,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7140 | |EntrezGene=7140 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11950 | |HGNC=11950 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-66bp_to_ENST00000492075_5end | |association_with_transcript=-66bp_to_ENST00000492075_5end | ||
|cluster_id=chr11:1946080..1946081,+ | |||
|coexpression_cluster_id=C3127 | |coexpression_cluster_id=C3127 | ||
|description=CAGE_peak_22_at_TNNT3_5end | |description=CAGE_peak_22_at_TNNT3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002541!2.40e-29!3;CL:0002537!3.52e-18!5;CL:0000349!5.37e-14!3;CL:0002577!5.37e-14!3;CL:0000039!1.36e-12!7;CL:0000586!1.36e-12!7 | |ontology_enrichment_celltype=CL:0002541!2.40e-29!3;CL:0002537!3.52e-18!5;CL:0000349!5.37e-14!3;CL:0002577!5.37e-14!3;CL:0000039!1.36e-12!7;CL:0000586!1.36e-12!7 | ||
|ontology_enrichment_celltype_v019=CL:0002537;4.05e-40;5!CL:0000349;3.46e-24;19!CL:0002541;8.00e-18;3!CL:0000134;9.48e-08;55!CL:0000048;8.27e-07;58 | |ontology_enrichment_celltype_v019=CL:0002537;4.05e-40;5!CL:0000349;3.46e-24;19!CL:0002541;8.00e-18;3!CL:0000134;9.48e-08;55!CL:0000048;8.27e-07;58 | ||
|ontology_enrichment_celltype_v019_2=CL:0002537,4.05e-40,5;CL:0000349,3.46e-24,19;CL:0002541,8.00e-18,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1799!5.05e-11!1;DOID:10165!5.05e-11!1;DOID:1798!5.05e-11!1 | |ontology_enrichment_disease=DOID:1799!5.05e-11!1;DOID:10165!5.05e-11!1;DOID:1798!5.05e-11!1 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.80e-54!14;UBERON:0000158!1.80e-54!14;UBERON:0003124!2.57e-34!7;UBERON:0000478!2.51e-31!24;UBERON:0000476!2.40e-29!3;UBERON:0000920!2.40e-29!3;UBERON:0000305!2.07e-22!7;UBERON:0004871!1.20e-19!8;UBERON:0004923!1.69e-12!57;UBERON:0001987!9.99e-11!4;UBERON:0004340!9.99e-11!4 | |ontology_enrichment_uberon=UBERON:0005631!1.80e-54!14;UBERON:0000158!1.80e-54!14;UBERON:0003124!2.57e-34!7;UBERON:0000478!2.51e-31!24;UBERON:0000476!2.40e-29!3;UBERON:0000920!2.40e-29!3;UBERON:0000305!2.07e-22!7;UBERON:0004871!1.20e-19!8;UBERON:0004923!1.69e-12!57;UBERON:0001987!9.99e-11!4;UBERON:0004340!9.99e-11!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;6.56e-45;10!UBERON:0000158;6.56e-45;10!UBERON:0000305;4.86e-29;7!UBERON:0000478;2.27e-19;24!UBERON:0003124;8.00e-18;3!UBERON:0000920;8.00e-18;3!UBERON:0001052;8.82e-14;4!UBERON:0004907;2.66e-11;5!UBERON:0004923;1.28e-07;55 | |ontology_enrichment_uberon_v019=UBERON:0005631;6.56e-45;10!UBERON:0000158;6.56e-45;10!UBERON:0000305;4.86e-29;7!UBERON:0000478;2.27e-19;24!UBERON:0003124;8.00e-18;3!UBERON:0000920;8.00e-18;3!UBERON:0001052;8.82e-14;4!UBERON:0004907;2.66e-11;5!UBERON:0004923;1.28e-07;55 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.02e-32,14;UBERON:0000158,2.02e-32,14;UBERON:0000305,4.86e-29,7;UBERON:0004871,1.43e-25,8;UBERON:0000478,2.27e-19,24;UBERON:0000920,8.00e-18,3;UBERON:0001052,8.82e-14,4;UBERON:0004907,2.66e-11,5;UBERON:0003124,2.03e-08,7;UBERON:0004923,1.27e-07,66 | |||
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|short_description=p22@TNNT3 | |short_description=p22@TNNT3 | ||
}} | }} |
Latest revision as of 04:49, 17 September 2015
Short description: | p22@TNNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_TNNT3_5end |
Coexpression cluster: | C3127_amniotic_chorionic_rectal_Placental_squamous_umbilical_pancreatic |
Association with transcript: | -66bp_to_ENST00000492075_5end |
EntrezGene: | TNNT3 |
HGNC: | 11950 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 4.05e-40 | 5 |
extraembryonic cell | 3.46e-24 | 19 |
chorionic membrane mesenchymal stem cell | 8.00e-18 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.02e-32 | 14 |
membranous layer | 2.02e-32 | 14 |
amnion | 4.86e-29 | 7 |
somatic layer of lateral plate mesoderm | 1.43e-25 | 8 |
extraembryonic structure | 2.27e-19 | 24 |
egg chorion | 8.00e-18 | 3 |
rectum | 8.82e-14 | 4 |
lower digestive tract | 2.66e-11 | 5 |
chorion | 2.03e-08 | 7 |
organ component layer | 1.27e-07 | 66 |