FFCP PHASE1:Hg19::chr19:35739679..35739690,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51599 | |EntrezGene=51599 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29572 | |HGNC=29572 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-91bp_to_ENST00000347609,uc002nyp.2_5end | |association_with_transcript=-91bp_to_ENST00000347609,uc002nyp.2_5end | ||
|cluster_id=chr19:35739679..35739690,+ | |||
|coexpression_cluster_id=C1817 | |||
|description=CAGE_peak_6_at_LSR_5end | |description=CAGE_peak_6_at_LSR_5end | ||
|id=chr19:35739679..35739690,+ | |id=chr19:35739679..35739690,+ | ||
|ontology_enrichment_celltype=CL:0000066!7.83e-27!254;CL:0000223!3.77e-13!59;CL:0002076!8.59e-11!43;CL:0002251!3.66e-07!21 | |ontology_enrichment_celltype=CL:0000066!7.83e-27!254;CL:0000223!3.77e-13!59;CL:0002076!8.59e-11!43;CL:0002251!3.66e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.26e-13;5!CL:1000507;8.45e-09;10!CL:1000494;8.45e-09;10!CL:1000497;1.22e-08;17!CL:0002518;1.22e-08;17!CL:0002231;3.86e-08;3!CL:1000449;9.70e-08;15!CL:0000349;1.02e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.19e-18,253;CL:0002322,2.87e-13,5;CL:1000507,6.17e-09,10;CL:1000494,6.17e-09,10;CL:1000497,1.20e-08,17;CL:0002518,1.20e-08,17;CL:0002231,1.28e-08,3;CL:1000449,7.66e-08,15;CL:0000349,1.09e-07,19;CL:0000223,1.60e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!4.47e-23!106;DOID:0050687!1.54e-15!143;DOID:1749!5.96e-09!14;DOID:299!4.64e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.71e-12;25!DOID:5093;8.57e-11;4!DOID:1612;8.57e-11;4!DOID:1749;2.16e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.69e-14,106;DOID:299,2.76e-12,25;DOID:5093,5.13e-11,4;DOID:1612,5.13e-11,4;DOID:0050687,5.04e-10,143;DOID:1749,2.70e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.85e-15!169;UBERON:0000925!4.85e-15!169;UBERON:0006595!4.85e-15!169;UBERON:0001007!3.24e-11!155;UBERON:0001555!3.24e-11!155;UBERON:0007026!3.24e-11!155;UBERON:0005911!5.30e-11!82;UBERON:0005177!7.20e-11!107;UBERON:0000077!1.17e-10!130;UBERON:0005172!1.31e-10!55;UBERON:0005173!1.31e-10!55;UBERON:0000466!2.00e-10!126;UBERON:0006554!3.45e-10!44;UBERON:0004921!5.60e-10!129;UBERON:0004185!5.60e-10!129;UBERON:0001008!9.84e-10!45;UBERON:0009569!6.61e-09!113;UBERON:0002417!2.02e-08!61;UBERON:0000916!2.02e-08!61;UBERON:0005631!5.47e-08!14;UBERON:0000158!5.47e-08!14;UBERON:0000464!6.20e-08!104;UBERON:0001041!2.44e-07!98;UBERON:0003064!3.92e-07!37;UBERON:0005153!4.03e-07!37;UBERON:0000058!4.96e-07!26;UBERON:0002530!5.66e-07!59;UBERON:0000489!7.73e-07!32;UBERON:0002113!9.58e-07!27;UBERON:0003918!9.58e-07!27;UBERON:0005095!9.58e-07!27;UBERON:0007687!9.58e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.48e-09;10!UBERON:0000158;2.48e-09;10!UBERON:0004211;8.45e-09;10!UBERON:0009773;8.45e-09;10!UBERON:0001231;8.45e-09;10!UBERON:0004810;8.45e-09;10!UBERON:0002423;1.23e-08;25!UBERON:0006555;9.70e-08;15!UBERON:0004819;9.70e-08;15!UBERON:0001285;9.70e-08;15!UBERON:0007684;9.70e-08;15!UBERON:0005172;1.10e-07;52!UBERON:0005173;1.10e-07;52!UBERON:0000478;2.59e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.36e-13,14;UBERON:0000158,1.36e-13,14;UBERON:0005172,6.74e-10,54;UBERON:0005173,6.74e-10,54;UBERON:0004810,6.17e-09,10;UBERON:0006554,6.85e-09,47;UBERON:0003124,8.83e-09,7;UBERON:0009497,9.19e-09,25;UBERON:0000015,9.19e-09,25;UBERON:0002423,9.19e-09,25;UBERON:0006235,9.19e-09,25;UBERON:0004161,9.19e-09,25;UBERON:0003929,1.16e-08,54;UBERON:0001008,1.24e-08,48;UBERON:0002417,1.68e-08,60;UBERON:0000916,1.68e-08,60;UBERON:0005911,6.68e-08,82;UBERON:0004211,7.66e-08,15;UBERON:0009773,7.66e-08,15;UBERON:0001231,7.66e-08,15;UBERON:0001285,7.66e-08,15;UBERON:0007684,7.66e-08,15;UBERON:0004208,7.66e-08,15;UBERON:0004119,1.93e-07,160;UBERON:0000925,1.93e-07,160;UBERON:0006595,1.93e-07,160;UBERON:0009569,2.26e-07,112;UBERON:0006555,2.77e-07,16;UBERON:0004819,2.77e-07,16;UBERON:0000478,3.37e-07,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,5.58240934377942,0.873765488520689,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.305653622991805,0.492603536699674,0.472264687882075,0,0,0,0.919421224478927,0.30120591877825,0,0.154934401160603,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0.426730222566507,0,0,0.661044872784862,0.954053754535364,0,0,0.764546456250458,0,0,0,0.393419540227666,0,0.205601498999509,0.501559486172034,0,0.946895611469467,0,0.334231370655521,0.589211814949674,0.886135578334485,0,0.128091319725675,0.260118695119756,0.164437904603676,0,0,0.14828656316206,0.535081656179426,2.09071047609954,0,0,0.68725489096526,0.253019692019503,0,0.651083453856419,0,0.150575119077773,0.255973222308837,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,2.18577172975525,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.545492241181669,1.14721838155602,2.19552671033272,2.38553582978673,1.2781333715647,1.14027160516907,2.01856680700503,0.36497735907583,0,0,0,0,0,0,0,0,0.220587945464788,0,0.237270619111097,0,0,0,0,0,0,0,3.80265104465493,2.94848165003288,1.77236972004421,0,4.05861847192275,0,0.768251997860379,0,0.603173834469785,0.648119116109707,0,0,0,0,0,0,0,0,3.1608175918371,1.71697232418975,0,0,0,0.93733833986777,0.839910640994298,0.992425680696705,0.268675568108545,0.871901815541886,1.15014803749563,0,0,0.207328115540772,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0,0.303127571446259,1.66435439510497,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,1.69203229428271,1.80455823272956,1.28913384510255,0,0,0,1.35359883872224,1.23224539367064,1.56869953835371,1.46139224653261,0.949964660035881,0,0,0,0,0.541892875087706,0.501689773854853,1.52925763827023,5.81753206250107,0.895499018888713,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.721287081534056,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0.384380134730212,0.638063562472921,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,1.03558180854457,0.43050537267123,3.36942951335251,0.886860307073351,0.689170200620878,0,0,0,0.476463550915578,0,0,0,0,0.320472213382419,0,2.69544237579135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0.146508179271894,0.242721043499027,0,0,5.49112314896687,1.48482340416319,4.30024982938925,0,0,0,0,0.63337622438398,0,0.276283915531148,0,0.306806047506464,0.123084805461069,0,0.449341755736634,1.61119057208048,0,0.0986434056369336,0,0,0,0.0927680981618513,0,1.30213880542617,1.31189999994294,0,0.341380344856499,0.762760950878299,0,0,0,0,0,0,0,0,0,0,0.10893846351899,1.67308493134324,0.0769502585037971,0,0.23056390438806,0.628303510868405,0.651884231532048,2.55200927785536,0.366390373607449,1.06606955203727,0,0,0,0.225595660617181,0.19606253431774,0.335643173951685,0,0,0,0.652931232636591,1.41353071433941,0,0,0.353830258013357,0,0,0,0,0.134802265961354,0,0,0.182454789215666,0.586993856796269,0,0.394584402849391,0,0,0.126373159256976,0.751617097072463,0.518440956986236,0,0,0,0,1.13843818411917,0,0.520679215005393,2.6457947301882,1.56706571844725,0.17472666824203,0,0.387025325156341,0.146178634172371,0.328461828212837,0,0.264768380074501,0,0,0,0.253243183823515,2.73771935828724,0.64127056201227,1.06726497369676,0.999048047910651,1.44090417154106,0.229073192331831,0.343189995723929,0.14405479798815,0.124252535565433,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,1.16495949527454,0.393915911536118,0.576911008668165,1.14586024552114,0.688992370603241,0.423366660328922,0,0,0.321506296930038,2.20063098555574,0.415440338029185,0.2249738915515,1.5476039091159,0.0607495566580247,1.67717343799633,0.157611414598396,0.262272940674991,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,1.90517903781507,0,0,0,0.513260513652988,2.81926008926669,0.106787412567695,0.628817220398664,0,0,0,0.121792598380896,2.55336503108073,0,0,0,0,0.471162288750703,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,1.71553273099941,0,0,0,0.244736704506468,0,0,0.219284049578707,0,0.578742114812744,0,1.28120759293973,0,0,0.138258436151731,0,0,0.163565394255844,0.327609848846413,0,0.422624246717254,0,0,0,0,0,0.839277046316667,0,0,0,0,0,0,0,0,0,0,0,1.60114149657094,0,0,0.0642292250964595,0,0,0,0.252071696221718,0.0691572524642179,0.161475645631851,0,1.07962490351128,0.707818340086442,0.917142992608395,0.231051332300676,0,0,0,0,0,1.56302802246618,0.261906694481422,0,2.21784129325568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| ||
|short_description=p6@LSR | |short_description=p6@LSR | ||
}} | }} |
Latest revision as of 10:57, 17 September 2015
Short description: | p6@LSR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LSR_5end |
Coexpression cluster: | C1817_Alveolar_smallcell_acantholytic_Hepatocyte_squamous_liver_mesothelioma |
Association with transcript: | -91bp_to_ENST00000347609, uc002nyp.2_5end |
EntrezGene: | LSR |
HGNC: | 29572 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.19e-18 | 253 |
embryonic stem cell | 2.87e-13 | 5 |
kidney tubule cell | 6.17e-09 | 10 |
nephron tubule epithelial cell | 6.17e-09 | 10 |
kidney cell | 1.20e-08 | 17 |
kidney epithelial cell | 1.20e-08 | 17 |
epithelial cell of prostate | 1.28e-08 | 3 |
epithelial cell of nephron | 7.66e-08 | 15 |
extraembryonic cell | 1.09e-07 | 19 |
endodermal cell | 1.60e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.36e-13 | 14 |
membranous layer | 1.36e-13 | 14 |
abdomen element | 6.74e-10 | 54 |
abdominal segment element | 6.74e-10 | 54 |
nephron tubule epithelium | 6.17e-09 | 10 |
urinary system structure | 6.85e-09 | 47 |
chorion | 8.83e-09 | 7 |
epithelium of foregut-midgut junction | 9.19e-09 | 25 |
anatomical boundary | 9.19e-09 | 25 |
hepatobiliary system | 9.19e-09 | 25 |
foregut-midgut junction | 9.19e-09 | 25 |
septum transversum | 9.19e-09 | 25 |
gut epithelium | 1.16e-08 | 54 |
renal system | 1.24e-08 | 48 |
abdominal segment of trunk | 1.68e-08 | 60 |
abdomen | 1.68e-08 | 60 |
endo-epithelium | 6.68e-08 | 82 |
nephron epithelium | 7.66e-08 | 15 |
renal tubule | 7.66e-08 | 15 |
nephron tubule | 7.66e-08 | 15 |
nephron | 7.66e-08 | 15 |
uriniferous tubule | 7.66e-08 | 15 |
nephrogenic mesenchyme | 7.66e-08 | 15 |
endoderm-derived structure | 1.93e-07 | 160 |
endoderm | 1.93e-07 | 160 |
presumptive endoderm | 1.93e-07 | 160 |
subdivision of trunk | 2.26e-07 | 112 |
excretory tube | 2.77e-07 | 16 |
kidney epithelium | 2.77e-07 | 16 |
extraembryonic structure | 3.37e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.69e-14 | 106 |
adenocarcinoma | 2.76e-12 | 25 |
thoracic cancer | 5.13e-11 | 4 |
breast cancer | 5.13e-11 | 4 |
cell type cancer | 5.04e-10 | 143 |
squamous cell carcinoma | 2.70e-08 | 14 |