FFCP PHASE1:Hg19::chr19:36000869..36000888,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:36000869..36000888,- to FFCP PHASE1:Hg19::chr19:36000869..36000888,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=93099 | |EntrezGene=93099 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25063 | |HGNC=25063 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000443857_5end | |||
|cluster_id=chr19:36000869..36000888,- | |||
|description=CAGE_peak_8_at_DMKN_5end | |||
|id=chr19:36000869..36000888,- | |||
|ontology_enrichment_celltype=CL:0000066!1.21e-43!254;CL:0002076!2.59e-20!43;CL:0000223!2.17e-14!59;CL:0002368!3.00e-10!13;CL:0002251!5.35e-09!21;CL:0002077!4.54e-08!33;CL:0000076!7.53e-08!62;CL:0002202!7.34e-07!9;CL:0002632!7.34e-07!9;CL:0000082!8.04e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.82e-25;42!CL:0002368;3.38e-20;13!CL:0002159;4.29e-13;14!CL:0002202;4.84e-12;9!CL:0002632;4.84e-12;9!CL:0002251;7.41e-12;20!CL:0000307;2.14e-08;3!CL:0002231;3.94e-08;3!CL:0002077;1.16e-07;34!CL:0002328;2.96e-07;3!CL:0002621;2.96e-07;3!CL:0000362;4.63e-07;9!CL:0000076;5.16e-07;63!CL:0000154;8.00e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.73e-31,42;CL:0000066,2.08e-28,253;CL:0000223,1.02e-20,58;CL:0002368,3.27e-20,13;CL:0000076,1.35e-14,63;CL:0002159,3.38e-13,14;CL:0002202,2.33e-12,9;CL:0002632,2.33e-12,9;CL:0002321,3.24e-12,250;CL:0002251,6.64e-12,20;CL:0002077,3.18e-09,34;CL:0000068,1.13e-08,3;CL:0000069,1.13e-08,3;CL:0000307,1.13e-08,3;CL:0000377,1.13e-08,3;CL:0002231,4.44e-08,3;CL:0002328,2.28e-07,3;CL:0002621,3.06e-07,3;CL:0000362,4.09e-07,9;CL:0000240,7.43e-07,6;CL:0000311,7.43e-07,6;CL:0000079,7.43e-07,6;CL:0000237,7.43e-07,6;CL:0000036,7.43e-07,6;CL:0000357,7.43e-07,6;CL:0000114,7.43e-07,6;CL:0000154,7.90e-07,6;CL:0000082,9.09e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000223;6.89e-12;58!CL:0000377;2.14e-08;3 | |||
|ontology_enrichment_disease=DOID:305!2.86e-25!106;DOID:0050687!9.69e-20!143;DOID:1749!2.02e-12!14;DOID:162!1.31e-10!235;DOID:14566!7.66e-10!239;DOID:299!4.07e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.71e-15;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.77e-15,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!4.09e-14!72;UBERON:0004119!1.94e-13!169;UBERON:0000925!1.94e-13!169;UBERON:0006595!1.94e-13!169;UBERON:0000065!2.55e-12!53;UBERON:0000464!6.95e-12!104;UBERON:0008947!2.41e-11!38;UBERON:0003258!2.41e-11!38;UBERON:0005153!4.12e-10!37;UBERON:0006554!4.40e-10!44;UBERON:0001007!6.35e-10!155;UBERON:0001555!6.35e-10!155;UBERON:0007026!6.35e-10!155;UBERON:0005157!7.08e-10!51;UBERON:0000466!7.55e-10!126;UBERON:0001008!1.19e-09!45;UBERON:0000077!1.23e-09!130;UBERON:0000072!1.27e-09!46;UBERON:0004921!1.94e-09!129;UBERON:0004185!1.94e-09!129;UBERON:0005177!9.68e-09!107;UBERON:0005181!2.24e-08!35;UBERON:0001041!2.45e-08!98;UBERON:0005178!9.19e-08!34;UBERON:0002224!9.19e-08!34;UBERON:0005911!1.14e-07!82;UBERON:0009569!2.51e-07!113;UBERON:0004807!3.82e-07!28;UBERON:0001048!5.76e-07!168;UBERON:0003064!6.05e-07!37;UBERON:0002048!7.58e-07!22;UBERON:0000117!7.58e-07!22;UBERON:0000171!7.58e-07!22;UBERON:0000170!7.58e-07!22;UBERON:0005597!7.58e-07!22;UBERON:0000118!7.58e-07!22;UBERON:0004802!8.04e-07!19;UBERON:0000115!8.04e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0005911;1.45e-10;36!UBERON:0004807;2.30e-10;22!UBERON:0000486;9.59e-09;12!UBERON:0003729;6.61e-08;13!UBERON:0000344;1.00e-07;20!UBERON:0005181;2.13e-07;35!UBERON:0004815;2.96e-07;3!UBERON:0002031;2.96e-07;3!UBERON:0001949;2.96e-07;3!UBERON:0005178;4.22e-07;34!UBERON:0002224;4.22e-07;34!UBERON:0005910;8.44e-07;6!UBERON:0007196;8.89e-07;15!UBERON:0001558;8.89e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,7.31e-11,74;UBERON:0005153,1.19e-10,37;UBERON:0005157,2.22e-10,47;UBERON:0005181,7.05e-09,35;UBERON:0004119,8.62e-09,160;UBERON:0000925,8.62e-09,160;UBERON:0006595,8.62e-09,160;UBERON:0003729,6.17e-08,13;UBERON:0005178,8.18e-08,34;UBERON:0002224,8.18e-08,34;UBERON:0004807,8.58e-08,28;UBERON:0000344,9.42e-08,20;UBERON:0000065,1.28e-07,54;UBERON:0004815,2.28e-07,3;UBERON:0002031,2.28e-07,3;UBERON:0005911,2.65e-07,82;UBERON:0001949,3.06e-07,3;UBERON:0007196,5.92e-07,15;UBERON:0001558,5.92e-07,15;UBERON:0005910,7.90e-07,6;UBERON:0004802,9.09e-07,19;UBERON:0000115,9.09e-07,19 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0.872338524100369,0,0,0,0.245733936501509,2.09340350391728,0.218441372130172,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.246301768349837,0.393553906568396,0,0,0.154816123316076,1.83884244895785,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,0.196468613246569,2.91436230634034,5.19098219898201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.66922267785295,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0.151357427644931,0,0,0,0.570471821544449,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0.211931901159562,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,1.35282597214308,1.09098448236334,1.72082757233402,1.21973706129595,1.85541675650079,1.16193942869518,0.621966330092223,0.504641701751257,1.09493207722749,0,0,0,0,0,0.591534000199219,0.168584690078102,0.482022059766964,0.330881918197182,0.217879444092406,0.237270619111097,0.269662616320329,0.196221465125346,0.769494313892781,0,0,0,0,0,0,0,0,0.860919069801795,0.171567810298526,5.04851312879678,2.24803506515239,1.70899253099772,1.66659201285353,0,0,0,0,0.117408694235822,0,0,0,0.790204397959275,0,0,0,0,0,1.00789276919316,1.84307626415102,1.25381931783988,0.871901815541886,1.53353071666084,0,0,0,0,0,0.063497894292169,0.381988425558278,0,1.71072446022705,0.205654985406647,0.901029173531752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.106727557803444,0.606255142892519,0,0.604780586659361,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,1.20859449591622,3.40860999515584,2.4861867012692,0,0,0,0.451199612907412,1.00119938235739,0.784349769176855,0,0.316654886678627,0,0,0.215915916102139,0,0,0.501689773854853,0.764628819135115,1.66215201785745,1.79099803777743,0,0,0,0.656029291399411,0.325378394664303,0,0,0,4.01985876597321,7.15066270640173,1.6068392984416,0,0,0,0,0.107420244868274,0,0,0,2.14870389969272,2.11409074101617,1.02090169995667,2.12431339796655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92444225451024,5.3624182042863,4.3556393944529,0.0941438007767792,2.58303223602738,0,2.21715076768338,2.06751060186264,0,0,0,0,0,0,0,0,0.854592569019785,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,4.57087800064329,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.849523652246594,0,0,0.71623345421307,0.593929361665277,0.921482106297696,0,0,0,0,2.32237948940793,0.398495976502139,0,0.503865495708552,0.306806047506464,0.369254416383208,0,0.359473404589307,0.358042349351218,0,0.493217028184668,0,0,0,0.0927680981618513,0,0.520855522170466,1.04951999995435,0,2.27586896570999,1.5255219017566,2.36387681767936,0,0,0,0,0,0,0,0,0,1.0893846351899,1.25481369850743,0.230850775511391,0,0.922255617552241,0.628303510868405,1.52106320690811,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0.816164040795739,1.83758992864123,0,0,0,0,0,0,0.208843899010911,0.067401132980677,1.60515529459758,0,0,0.391329237864179,0,0,0,0,0.758238955541855,0.751617097072463,0.207376382794494,0,0,0,1.19472429772959,3.9845336444171,0.138674673013139,0.347119476670262,1.56787835863004,1.13176968554523,0.52418000472609,0.171986032471617,0.870806981601766,0.438535902517113,0.903270027585302,0.678923115418936,2.38291542067051,0,1.37041924646751,0,0,0.977756913674015,0,0,1.19885765749278,0.864542502924636,0.80175617316141,0,0.720273989940749,0.49701014226173,0.471388069233591,0.135904206073614,0.104602846312333,0,0.288950589901519,0,0,0,0,0,0,0.229160424011684,0,0.599037001496973,0,0,0,0,0,0.315132729228895,0.0824158583811665,0.471824806979294,0,1.52411997718412,0,0,2.08979093004525,2.20063098555574,1.66176135211674,0,0.77380195455795,0,1.67717343799633,0.472834243795189,0.262272940674991,2.53440807646576,0,1.72723677587501,0,0,1.017074150619,0,0,0,0,0,0,0,0,0,0,0,0.855434189421647,0.704815022316672,0.213574825135389,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0.751288044986092,0,0,0,0.214821114084977,0.464033759878494,0,0,0,0,0,0,1.07220795687463,0,0.226705925512272,0,0.244736704506468,0,3.39681591877069,4.16639694199544,0.706756583783524,2.31496845925098,0,0,0,0,0,0,0,0,0,1.2288645437686,1.05656061679314,0,0,0.172214979660816,0,0,1.258915569475,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0.588886311006154,2.12345502025933,1.46742878817343,5.66075764136657,0,0,0,0.902523940191087,0,1.56302802246618,0,0,1.33070477595341,0,0,0.206686796501184,0,0,0,0,0,0.383287282918786,0,0,0.606965604236632,0.227662191351298,0,0,0,0,0,1.89110145414349,0.11123140189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| ||
|short_description=p8@DMKN | |||
}} | }} |
Latest revision as of 12:18, 17 September 2015
Short description: | p8@DMKN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_DMKN_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000443857_5end |
EntrezGene: | DMKN |
HGNC: | 25063 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.73e-31 | 42 |
epithelial cell | 2.08e-28 | 253 |
endodermal cell | 1.02e-20 | 58 |
respiratory epithelial cell | 3.27e-20 | 13 |
squamous epithelial cell | 1.35e-14 | 63 |
general ecto-epithelial cell | 3.38e-13 | 14 |
epithelial cell of tracheobronchial tree | 2.33e-12 | 9 |
epithelial cell of lower respiratory tract | 2.33e-12 | 9 |
embryonic cell | 3.24e-12 | 250 |
epithelial cell of alimentary canal | 6.64e-12 | 20 |
ecto-epithelial cell | 3.18e-09 | 34 |
duct epithelial cell | 1.13e-08 | 3 |
branched duct epithelial cell | 1.13e-08 | 3 |
tracheal epithelial cell | 1.13e-08 | 3 |
tracheoblast | 1.13e-08 | 3 |
epithelial cell of prostate | 4.44e-08 | 3 |
bronchial epithelial cell | 2.28e-07 | 3 |
gingival epithelial cell | 3.06e-07 | 3 |
epidermal cell | 4.09e-07 | 9 |
stratified squamous epithelial cell | 7.43e-07 | 6 |
keratin accumulating cell | 7.43e-07 | 6 |
stratified epithelial cell | 7.43e-07 | 6 |
keratinizing barrier epithelial cell | 7.43e-07 | 6 |
epithelial fate stem cell | 7.43e-07 | 6 |
stratified epithelial stem cell | 7.43e-07 | 6 |
surface ectodermal cell | 7.43e-07 | 6 |
protein secreting cell | 7.90e-07 | 6 |
epithelial cell of lung | 9.09e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
respiratory system | 7.31e-11 | 74 |
epithelial bud | 1.19e-10 | 37 |
epithelial fold | 2.22e-10 | 47 |
thoracic segment organ | 7.05e-09 | 35 |
endoderm-derived structure | 8.62e-09 | 160 |
endoderm | 8.62e-09 | 160 |
presumptive endoderm | 8.62e-09 | 160 |
mouth mucosa | 6.17e-08 | 13 |
thoracic cavity element | 8.18e-08 | 34 |
thoracic cavity | 8.18e-08 | 34 |
respiratory system epithelium | 8.58e-08 | 28 |
mucosa | 9.42e-08 | 20 |
respiratory tract | 1.28e-07 | 54 |
lower respiratory tract epithelium | 2.28e-07 | 3 |
epithelium of bronchus | 2.28e-07 | 3 |
endo-epithelium | 2.65e-07 | 82 |
gingival epithelium | 3.06e-07 | 3 |
tracheobronchial tree | 5.92e-07 | 15 |
lower respiratory tract | 5.92e-07 | 15 |
transitional epithelium | 7.90e-07 | 6 |
respiratory tract epithelium | 9.09e-07 | 19 |
lung epithelium | 9.09e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.77e-15 | 14 |