FFCP PHASE1:Hg19::chr4:3387594..3387615,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6002 | |EntrezGene=6002 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9994 | |HGNC=9994 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-82bp_to_ENST00000504194_5end | |association_with_transcript=-82bp_to_ENST00000504194_5end | ||
|cluster_id=chr4:3387594..3387615,+ | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_18_at_RGS12_5end | |description=CAGE_peak_18_at_RGS12_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000148!2.15e-16!10;CL:0000541!2.15e-16!10;CL:0000147!2.33e-11!14;CL:0002567!2.64e-11!3;CL:0002251!3.14e-08!21;CL:0002076!8.43e-08!43;CL:0000710!1.36e-07!20 | |ontology_enrichment_celltype=CL:0000148!2.15e-16!10;CL:0000541!2.15e-16!10;CL:0000147!2.33e-11!14;CL:0002567!2.64e-11!3;CL:0002251!3.14e-08!21;CL:0002076!8.43e-08!43;CL:0000710!1.36e-07!20 | ||
|ontology_enrichment_celltype_v019=CL:0000148;5.92e-107;10!CL:0000147;1.72e-76;14!CL:0002567;1.10e-66;3!CL:0000710;1.27e-53;20!CL:0000075;9.11e-40;27!CL:0002077;7.68e-28;34!CL:0002566;4.59e-23;1!CL:0000150;8.16e-11;9!CL:0002623;1.35e-08;3!CL:0000149;7.91e-07;4 | |ontology_enrichment_celltype_v019=CL:0000148;5.92e-107;10!CL:0000147;1.72e-76;14!CL:0002567;1.10e-66;3!CL:0000710;1.27e-53;20!CL:0000075;9.11e-40;27!CL:0002077;7.68e-28;34!CL:0002566;4.59e-23;1!CL:0000150;8.16e-11;9!CL:0002623;1.35e-08;3!CL:0000149;7.91e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,8.11e-107,10;CL:0000541,8.11e-107,10;CL:0000147,2.15e-76,14;CL:0002567,1.23e-66,3;CL:0000710,1.49e-53,20;CL:0000075,1.02e-39,27;CL:0002077,1.45e-31,34;CL:0000333,5.66e-25,41;CL:0002566,6.40e-23,1;CL:0000133,1.32e-17,59;CL:0000221,1.68e-14,72;CL:0000150,7.96e-11,9;CL:0002623,1.30e-08,3;CL:0000149,7.70e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000133;1.23e-09;59!CL:0000221;4.20e-08;72 | |ontology_enrichment_development_v019=CL:0000133;1.23e-09;59!CL:0000221;4.20e-08;72 | ||
|ontology_enrichment_disease=DOID:1749!4.18e-07!14 | |ontology_enrichment_disease=DOID:1749!4.18e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:1909;3.06e-12;2 | |ontology_enrichment_disease_v019=DOID:1909;3.06e-12;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,2.59e-12,2 | |||
|ontology_enrichment_uberon=UBERON:0000974!2.17e-10!10;UBERON:0003729!7.41e-10!5;UBERON:0003343!1.75e-07!4;UBERON:0004785!1.75e-07!4;UBERON:0003127!5.48e-07!2 | |ontology_enrichment_uberon=UBERON:0000974!2.17e-10!10;UBERON:0003729!7.41e-10!5;UBERON:0003343!1.75e-07!4;UBERON:0004785!1.75e-07!4;UBERON:0003127!5.48e-07!2 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p18@RGS12 | |short_description=p18@RGS12 | ||
}} | }} |
Latest revision as of 14:12, 17 September 2015
Short description: | p18@RGS12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_RGS12_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -82bp_to_ENST00000504194_5end |
EntrezGene: | RGS12 |
HGNC: | 9994 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 8.11e-107 | 10 |
melanoblast | 8.11e-107 | 10 |
pigment cell | 2.15e-76 | 14 |
light melanocyte | 1.23e-66 | 3 |
neurecto-epithelial cell | 1.49e-53 | 20 |
columnar/cuboidal epithelial cell | 1.02e-39 | 27 |
ecto-epithelial cell | 1.45e-31 | 34 |
migratory neural crest cell | 5.66e-25 | 41 |
dark melanocyte | 6.40e-23 | 1 |
neurectodermal cell | 1.32e-17 | 59 |
ectodermal cell | 1.68e-14 | 72 |
glandular epithelial cell | 7.96e-11 | 9 |
acinar cell of salivary gland | 1.30e-08 | 3 |
visual pigment cell | 7.70e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.59e-12 | 2 |