FFCP PHASE1:Hg19::chr4:3465027..3465050,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=285489 | |EntrezGene=285489 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26594 | |HGNC=26594 | ||
|TSSclassifier=strong | |||
|UniProt=Q18PE1,E9PB56 | |UniProt=Q18PE1,E9PB56 | ||
|association_with_transcript=0bp_to_ENST00000340083,ENST00000389653,ENST00000503688,ENST00000507039,ENST00000511267,NM_001164673,NM_173660,uc003ghd.2,uc003ghe.2_5end | |association_with_transcript=0bp_to_ENST00000340083,ENST00000389653,ENST00000503688,ENST00000507039,ENST00000511267,NM_001164673,NM_173660,uc003ghd.2,uc003ghe.2_5end | ||
|cluster_id=chr4:3465027..3465050,+ | |||
|coexpression_cluster_id=C397 | |||
|description=CAGE_peak_1_at_DOK7_5end | |description=CAGE_peak_1_at_DOK7_5end | ||
|id=chr4:3465027..3465050,+ | |id=chr4:3465027..3465050,+ | ||
|ontology_enrichment_celltype=CL:0000188!4.48e-11!9 | |ontology_enrichment_celltype=CL:0000188!4.48e-11!9 | ||
|ontology_enrichment_celltype_v019=CL:0000188;7.24e-16;9!CL:0000680;4.74e-14;7!CL:0002586;6.72e-13;3!CL:0000515;1.33e-12;3!CL:0000149;8.73e-10;4!CL:0000056;1.45e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.23e-15,9;CL:0002586,7.03e-13,3;CL:0000515,8.50e-10,4;CL:0000149,9.02e-10,4 | |||
|ontology_enrichment_development_v019=CL:0000515;1.45e-09;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;4.29e-10;4!DOID:1612;4.29e-10;4!DOID:114;1.89e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,3.64e-10,4;DOID:1612,3.64e-10,4;DOID:114,2.23e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.50e-22!115;UBERON:0000481!1.23e-07!347;UBERON:0004733!2.67e-07!12;UBERON:0002028!2.67e-07!12;UBERON:0007277!2.67e-07!12;UBERON:0003076!5.90e-07!15;UBERON:0003057!5.90e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;8.46e-34;16!UBERON:0002036;8.46e-34;16!UBERON:0002385;6.23e-16;31!UBERON:0001015;6.23e-16;31!UBERON:0000383;6.23e-16;31!UBERON:0001781;6.72e-13;3!UBERON:0001782;6.72e-13;3!UBERON:0005090;3.29e-09;2!UBERON:0001630;3.29e-09;2!UBERON:0007100;4.37e-09;25!UBERON:0000341;1.31e-08;2!UBERON:0000007;1.31e-08;2!UBERON:0000966;6.57e-08;5!UBERON:0005388;6.57e-08;5!UBERON:0001802;6.57e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,7.03e-13,3;UBERON:0005424,7.03e-13,3;UBERON:0007023,2.06e-11,114;UBERON:0001781,9.02e-10,4;UBERON:0005090,2.43e-09,2;UBERON:0001630,2.43e-09,2;UBERON:0000007,1.42e-08,2;UBERON:0007100,2.03e-08,27;UBERON:0000341,2.96e-08,2;UBERON:0001134,7.20e-07,62;UBERON:0002036,7.20e-07,62;UBERON:0003082,7.20e-07,62 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,1.26755034821831,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,3.95102198979638,4.29243081047436,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.899756920638513,0,0,0,0,0,0,1.88215698667853,1.64381058040307,4.1184021545176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80400793335198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0,0,0,3.59030175162945,3.93617574839647,1.30151357865721,0.103041011647722,0.27470839445503,0.082509499920588,0,0,0,4.15684088656124,0.308097234229289,1.22802939780904,2.34322173223702,0.107420244868274,1.16013355131383,2.13066568540252,6.23224249527162,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,1.39473591775749,0,0.251932747854276,0.511343412510774,0,0,0.0898683511473268,0.179021174675609,0,0.0986434056369336,0,0,0,0.0927680981618513,0,2.86470537193757,0,0,0,0,0.236387681767936,0,0,0,0,0,0,3.64911557773041,3.25102380848902,0,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404406797884062,1.60515529459758,0,0,0,0,0,0,0,0,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0.694238953340524,0,0,1.39781334593624,0,0,0,0,0.290967049465258,0,0.225980740780532,0,0,0,0.782205530939212,0,1.28071796843612,2.99714414373195,0,0,0,0,0,0.471388069233591,0.135904206073614,0.104602846312333,0,0,0,0,0,0.859530882839914,0,1.67569440763353,3.89572720819862,0.717873024576814,3.59422200898184,3.004582336956,2.67805748930247,3.49354056930977,0,0,0,0,0,0,0,0,0,0,0,0,4.94942561413301,0.77380195455795,0,0,0.0788057072991982,0.419636705079985,0,0,0,1.42939065274673,1.98627591109629,0,0,0,0,0,0,0,0,0,1.32506888912221,0.258565912723101,0.13223260174269,0,0,0.106787412567695,0,0.828478110694391,0,0,0.243585196761792,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,1.14681839138014,1.22021956690538,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.4012771745051,0,0,0,0,0.857766365499703,0.782982875895635,0,0,0.244736704506468,0,0.617602894321944,0,0,0,0,0.256241518587947,1.0362910251936,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0.3062454773532,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.376051641746286,0,0.781514011233092,0,0,0,0,0,0.206686796501184,0,0,0,1.48863353516788,0,0,0,0,1.21393120847326,1.59363533945908,0,0,0,0.543757863814654,0,0,0,0.156986185701028,0,0,0,0.215927591218621,0,0.929195074296532,0,0,0,0,0.207216164163037,0,0,0.430227358820278,0,0,0,5.26945797651315,0,0,0.335566295393377,0.490751168076215,0.609589624911347,5.82685953469105,1.64260490969995,0,0.485710993059139,0,0.198950775161368,0,0,0,0,0,0,0,0.245148321753905,0.235676547101626,0,0,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0.109265571963696,0,0,0,0.0918948995348449,0,1.89446745545599,2.14371304124943,0,0.103432995861895,1.0661699095049,1.1903221573187,0,0,0,0.190941474834495,0.404234377916439,0.435433495793923,1.36893320434112,0,0.0717222053926763,1.33064142618405,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,1.26755034821831,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,3.95102198979638,4.29243081047436,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.899756920638513,0,0,0,0,0,0,1.88215698667853,1.64381058040307,4.1184021545176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80400793335198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0,0,0,3.59030175162945,3.93617574839647,1.30151357865721,0.103041011647722,0.27470839445503,0.082509499920588,0,0,0,4.15684088656124,0.308097234229289,1.22802939780904,2.34322173223702,0.107420244868274,1.16013355131383,2.13066568540252,6.23224249527162,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,1.39473591775749,0,0.251932747854276,0.511343412510774,0,0,0.0898683511473268,0.179021174675609,0,0.0986434056369336,0,0,0,0.0927680981618513,0,2.86470537193757,0,0,0,0,0.236387681767936,0,0,0,0,0,0,3.64911557773041,3.25102380848902,0,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404406797884062,1.60515529459758,0,0,0,0,0,0,0,0,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0.694238953340524,0,0,1.39781334593624,0,0,0,0,0.290967049465258,0,0.225980740780532,0,0,0,0.782205530939212,0,1.28071796843612,2.99714414373195,0,0,0,0,0,0.471388069233591,0.135904206073614,0.104602846312333,0,0,0,0,0,0.859530882839914,0,1.67569440763353,3.89572720819862,0.717873024576814,3.59422200898184,3.004582336956,2.67805748930247,3.49354056930977,0,0,0,0,0,0,0,0,0,0,0,0,4.94942561413301,0.77380195455795,0,0,0.0788057072991982,0.419636705079985,0,0,0,1.42939065274673,1.98627591109629,0,0,0,0,0,0,0,0,0,1.32506888912221,0.258565912723101,0.13223260174269,0,0,0.106787412567695,0,0.828478110694391,0,0,0.243585196761792,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,1.14681839138014,1.22021956690538,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.4012771745051,0,0,0,0,0.857766365499703,0.782982875895635,0,0,0.244736704506468,0,0.617602894321944,0,0,0,0,0.256241518587947,1.0362910251936,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0.3062454773532,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.376051641746286,0,0.781514011233092,0,0,0,0,0,0.206686796501184,0,0,0,1.48863353516788,0,0,0,0,1.21393120847326,1.59363533945908,0,0,0,0.543757863814654,0,0,0,0.156986185701028,0,0,0,0.215927591218621,0,0.929195074296532,0,0,0,0,0.207216164163037,0,0,0.430227358820278,0,0,0,5.26945797651315,0,0,0.335566295393377,0.490751168076215,0.609589624911347,5.82685953469105,1.64260490969995,0,0.485710993059139,0,0.198950775161368,0,0,0,0,0,0,0,0.245148321753905,0.235676547101626,0,0,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0.109265571963696,0,0,0,0.0918948995348449,0,1.89446745545599,2.14371304124943,0,0.103432995861895,1.0661699095049,1.1903221573187,0,0,0,0.190941474834495,0.404234377916439,0.435433495793923,1.36893320434112,0,0.0717222053926763,1.33064142618405,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p1@DOK7 | |short_description=p1@DOK7 | ||
}} | }} |
Latest revision as of 14:24, 17 September 2015
Short description: | p1@DOK7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DOK7_5end |
Coexpression cluster: | C397_mesenchymal_Myoblast_rhabdomyosarcoma_Hepatic_Melanocyte_astrocytoma_Skeletal |
Association with transcript: | 0bp_to_ENST00000340083, ENST00000389653, ENST00000503688, ENST00000507039, ENST00000511267, NM_001164673, NM_173660, uc003ghd.2, uc003ghe.2_5end |
EntrezGene: | DOK7 |
HGNC: | 26594 |
UniProt: | Q18PE1E9PB56 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.23e-15 | 9 |
retinal pigment epithelial cell | 7.03e-13 | 3 |
skeletal muscle myoblast | 8.50e-10 | 4 |
visual pigment cell | 9.02e-10 | 4 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 7.03e-13 | 3 |
presumptive retinal pigmented epithelium | 7.03e-13 | 3 |
adult organism | 2.06e-11 | 114 |
layer of retina | 9.02e-10 | 4 |
muscle structure | 2.43e-09 | 2 |
muscle organ | 2.43e-09 | 2 |
pituitary gland | 1.42e-08 | 2 |
primary circulatory organ | 2.03e-08 | 27 |
throat | 2.96e-08 | 2 |
skeletal muscle tissue | 7.20e-07 | 62 |
striated muscle tissue | 7.20e-07 | 62 |
myotome | 7.20e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 3.64e-10 | 4 |
breast cancer | 3.64e-10 | 4 |
heart disease | 2.23e-09 | 2 |