FFCP PHASE1:Hg19::chr10:22606104..22606114,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23412 | |EntrezGene=23412 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23332 | |HGNC=23332 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-308bp_to_ENST00000472673_5end | |association_with_transcript=-308bp_to_ENST00000472673_5end | ||
|cluster_id=chr10:22606104..22606114,+ | |||
|description=CAGE_peak_8_at_COMMD3_5end | |description=CAGE_peak_8_at_COMMD3_5end | ||
|id=chr10:22606104..22606114,+ | |id=chr10:22606104..22606114,+ | ||
|ontology_enrichment_celltype=CL:0000624!1.26e-14!6;CL:0000898!1.17e-11!3;CL:0000791!5.15e-11!18;CL:0000789!5.15e-11!18;CL:0002420!5.15e-11!18;CL:0002419!5.15e-11!18;CL:0000790!5.15e-11!18;CL:0000815!1.77e-08!2;CL:0000792!1.77e-08!2;CL:0002677!1.77e-08!2;CL:0000084!1.49e-07!25;CL:0000827!1.49e-07!25;CL:0000838!5.97e-07!52;CL:0000542!8.97e-07!53;CL:0000051!8.97e-07!53 | |ontology_enrichment_celltype=CL:0000624!1.26e-14!6;CL:0000898!1.17e-11!3;CL:0000791!5.15e-11!18;CL:0000789!5.15e-11!18;CL:0002420!5.15e-11!18;CL:0002419!5.15e-11!18;CL:0000790!5.15e-11!18;CL:0000815!1.77e-08!2;CL:0000792!1.77e-08!2;CL:0002677!1.77e-08!2;CL:0000084!1.49e-07!25;CL:0000827!1.49e-07!25;CL:0000838!5.97e-07!52;CL:0000542!8.97e-07!53;CL:0000051!8.97e-07!53 | ||
|ontology_enrichment_celltype_v019=CL:0000815;2.45e-12;2!CL:0000792;2.45e-12;2!CL:0002677;2.45e-12;2!CL:0000898;1.17e-08;3!CL:0002577;1.17e-08;3!CL:0002327;8.37e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000815,1.65e-12,2;CL:0000792,1.65e-12,2;CL:0002677,1.65e-12,2;CL:0000898,8.96e-09,3;CL:0002577,1.04e-08,3;CL:0002327,9.11e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0008425;2.93e-23;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4556;8.31e-09;3!DOID:5093;8.37e-07;4!DOID:1612;8.37e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:4556,8.31e-09,3;DOID:5093,9.11e-07,4;DOID:1612,9.11e-07,4 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;8.37e-07;4!UBERON:0001911;8.37e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001987,7.70e-07,4;UBERON:0004340,7.70e-07,4;UBERON:0001911,9.11e-07,4;UBERON:0005333,9.11e-07,4;UBERON:0008425,9.11e-07,4;UBERON:0005311,9.11e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0.263384084775077,0.196709770113833,0,0.205601498999509,0.167186495390678,1.95553359980154,0.946895611469467,1.94826728407911,0.111410456885174,0.589211814949674,0.221533894583621,0,0,0,0,0,0,0.741432815810302,1.60524496853828,1.04535523804977,0,0.383220493601921,1.37450978193052,0.506039384039006,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0,0.591092280605782,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0.614481528616916,0.223676107892416,0.500547425135725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,1.13697999995054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0.166211681900156,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0.067401132980677,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.16801009558219,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.827356886187777,0.333694205676207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985123076837112,1.07185652062471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0.263384084775077,0.196709770113833,0,0.205601498999509,0.167186495390678,1.95553359980154,0.946895611469467,1.94826728407911,0.111410456885174,0.589211814949674,0.221533894583621,0,0,0,0,0,0,0.741432815810302,1.60524496853828,1.04535523804977,0,0.383220493601921,1.37450978193052,0.506039384039006,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0,0.591092280605782,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0.614481528616916,0.223676107892416,0.500547425135725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,1.13697999995054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0.166211681900156,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0.067401132980677,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.16801009558219,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.827356886187777,0.333694205676207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985123076837112,1.07185652062471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@COMMD3 | |short_description=p8@COMMD3 | ||
}} | }} |
Latest revision as of 14:48, 17 September 2015
Short description: | p8@COMMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_COMMD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -308bp_to_ENST00000472673_5end |
EntrezGene: | COMMD3 |
HGNC: | 23332 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regulatory T cell | 1.65e-12 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.65e-12 | 2 |
naive regulatory T cell | 1.65e-12 | 2 |
naive T cell | 8.96e-09 | 3 |
placental epithelial cell | 1.04e-08 | 3 |
mammary gland epithelial cell | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
placenta | 7.70e-07 | 4 |
allantois | 7.70e-07 | 4 |
mammary gland | 9.11e-07 | 4 |
mammary bud | 9.11e-07 | 4 |
mammary ridge | 9.11e-07 | 4 |
mammary placode | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lung large cell carcinoma | 8.31e-09 | 3 |
thoracic cancer | 9.11e-07 | 4 |
breast cancer | 9.11e-07 | 4 |