FFCP PHASE1:Hg19::chr17:75277512..75277592,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:75277512..75277592,+ to FFCP PHASE1:Hg19::chr17:75277512..75277592,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10801 | |EntrezGene=10801 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7323 | |HGNC=7323 | ||
|TSSclassifier=strong | |||
|UniProt=F5GWR9,Q9UHD8 | |UniProt=F5GWR9,Q9UHD8 | ||
|association_with_transcript=20bp_to_ENST00000397613,ENST00000427177,NM_001113491,uc002jts.3,uc010wtk.1_5end | |||
|cluster_id=chr17:75277512..75277592,+ | |||
|description=CAGE_peak_2_at_SEPT9_5end | |||
|id=chr17:75277512..75277592,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.58e-55!254;CL:0000223!8.39e-23!59;CL:0002076!8.09e-18!43;CL:0002321!3.24e-14!248;CL:0000220!6.90e-14!246;CL:0000076!4.83e-09!62;CL:0002368!1.96e-08!13;CL:1000497!2.17e-08!18;CL:0002518!2.17e-08!18;CL:0000077!2.28e-08!19;CL:0002251!4.81e-08!21;CL:0000548!1.27e-07!679;CL:0000004!1.27e-07!679;CL:0000255!1.27e-07!679;CL:1000449!2.67e-07!16;CL:0000012!3.48e-07!682;CL:0002159!8.63e-07!13;CL:1000507!8.83e-07!12;CL:1000494!8.83e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.45e-14;42!CL:0002251;1.26e-08;20!CL:1000497;1.49e-08;17!CL:0002518;1.49e-08;17!CL:0002368;1.71e-08;13!CL:0000077;1.99e-08;19!CL:1000507;1.87e-07;10!CL:1000494;1.87e-07;10!CL:1000449;1.93e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.64e-54,253;CL:0000223,1.38e-23,58;CL:0002076,1.36e-18,42;CL:0002321,5.10e-14,250;CL:0002251,1.15e-08,20;CL:1000497,1.58e-08,17;CL:0002518,1.58e-08,17;CL:0002368,1.72e-08,13;CL:0000077,2.00e-08,19;CL:0000076,2.67e-08,63;CL:1000507,1.89e-07,10;CL:1000494,1.89e-07,10;CL:1000449,2.03e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000223;1.53e-12;58!UBERON:0001041;1.89e-08;30!UBERON:0006595;1.29e-07;86!UBERON:0008947;7.69e-07;29 | |||
|ontology_enrichment_disease=DOID:305!1.42e-33!106;DOID:0050687!1.37e-27!143;DOID:162!1.75e-16!235;DOID:14566!2.32e-15!239;DOID:299!6.72e-10!25;DOID:1749!2.82e-07!14;DOID:7!2.95e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:299;5.81e-10;25!DOID:305;7.05e-10;106!DOID:1749;2.51e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.60e-34,106;DOID:0050687,1.39e-27,143;DOID:162,1.25e-16,235;DOID:14566,1.51e-15,239;DOID:299,5.72e-10,25;DOID:1749,2.52e-07,14;DOID:7,3.37e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.80e-32!169;UBERON:0000925!5.80e-32!169;UBERON:0006595!5.80e-32!169;UBERON:0001007!5.99e-27!155;UBERON:0001555!5.99e-27!155;UBERON:0007026!5.99e-27!155;UBERON:0004921!2.23e-25!129;UBERON:0004185!2.23e-25!129;UBERON:0001048!4.56e-24!168;UBERON:0005177!5.45e-23!107;UBERON:0000077!8.03e-23!130;UBERON:0000466!2.99e-22!126;UBERON:0003104!9.91e-21!238;UBERON:0009142!9.91e-21!238;UBERON:0001041!2.42e-20!98;UBERON:0005911!3.32e-19!82;UBERON:0000481!9.65e-18!347;UBERON:0000062!2.51e-17!511;UBERON:0000464!2.58e-16!104;UBERON:0009569!1.39e-15!113;UBERON:0002100!4.63e-14!216;UBERON:0005172!7.27e-14!55;UBERON:0005173!7.27e-14!55;UBERON:0006554!1.32e-13!44;UBERON:0001008!1.53e-13!45;UBERON:0001004!1.46e-12!72;UBERON:0000065!2.50e-11!53;UBERON:0003929!2.54e-11!54;UBERON:0000922!2.64e-11!612;UBERON:0002530!6.93e-11!59;UBERON:0002417!9.13e-11!61;UBERON:0000916!9.13e-11!61;UBERON:0000468!9.29e-11!659;UBERON:0005153!1.16e-10!37;UBERON:0008947!2.12e-10!38;UBERON:0003258!2.12e-10!38;UBERON:0002050!2.65e-10!605;UBERON:0005423!2.65e-10!605;UBERON:0000923!2.85e-10!604;UBERON:0005291!2.85e-10!604;UBERON:0006598!2.85e-10!604;UBERON:0002532!2.85e-10!604;UBERON:0003064!4.06e-10!37;UBERON:0000467!6.69e-10!625;UBERON:0000480!1.30e-09!626;UBERON:0000058!1.34e-09!26;UBERON:0002365!2.22e-09!31;UBERON:0002330!2.22e-09!31;UBERON:0000072!2.25e-09!46;UBERON:0005178!3.60e-09!34;UBERON:0002224!3.60e-09!34;UBERON:0000475!3.95e-09!365;UBERON:0005157!4.63e-09!51;UBERON:0002113!1.30e-08!27;UBERON:0003918!1.30e-08!27;UBERON:0005095!1.30e-08!27;UBERON:0007687!1.30e-08!27;UBERON:0000063!1.35e-08!97;UBERON:0002553!1.39e-08!70;UBERON:0005181!1.67e-08!35;UBERON:0000926!2.73e-08!448;UBERON:0004120!2.73e-08!448;UBERON:0006603!2.73e-08!448;UBERON:0009497!4.13e-08!25;UBERON:0000015!4.13e-08!25;UBERON:0002423!4.13e-08!25;UBERON:0006235!4.13e-08!25;UBERON:0004161!4.13e-08!25;UBERON:0007499!6.34e-08!25;UBERON:0009856!8.90e-08!26;UBERON:0005256!1.47e-07!143;UBERON:0000080!1.55e-07!18;UBERON:0002120!1.55e-07!18;UBERON:0004875!1.55e-07!18;UBERON:0005721!1.55e-07!18;UBERON:0005754!1.55e-07!18;UBERON:0007297!1.55e-07!18;UBERON:0003886!1.77e-07!63;UBERON:0004211!2.67e-07!16;UBERON:0001285!2.67e-07!16;UBERON:0007684!2.67e-07!16;UBERON:0003220!2.67e-07!16;UBERON:0004208!2.67e-07!16;UBERON:0003103!2.84e-07!69;UBERON:0000489!3.09e-07!32;UBERON:0006555!3.20e-07!17;UBERON:0005103!3.20e-07!17;UBERON:0000083!3.20e-07!17;UBERON:0009201!3.20e-07!17;UBERON:0004819!3.20e-07!17;UBERON:0006553!3.20e-07!17;UBERON:0003074!3.20e-07!17;UBERON:0003060!3.20e-07!17;UBERON:0000949!3.51e-07!45;UBERON:0004876!5.07e-07!20;UBERON:0003887!6.08e-07!21;UBERON:0008835!6.30e-07!22;UBERON:0003894!6.30e-07!22;UBERON:0009854!8.70e-07!23;UBERON:0009773!8.83e-07!12;UBERON:0001231!8.83e-07!12;UBERON:0004810!8.83e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;6.10e-11;30!UBERON:0001008;6.10e-11;30!UBERON:0000065;3.30e-09;44!UBERON:0002365;4.07e-09;31!UBERON:0002330;4.07e-09;31!UBERON:0000072;4.49e-09;37!UBERON:0005911;5.82e-09;36!UBERON:0005177;6.74e-09;99!UBERON:0005172;7.13e-09;52!UBERON:0005173;7.13e-09;52!UBERON:0005178;9.88e-09;34!UBERON:0002224;9.88e-09;34!UBERON:0002113;3.02e-08;24!UBERON:0011143;3.02e-08;24!UBERON:0002423;4.11e-08;25!UBERON:0004807;6.55e-08;22!UBERON:0005181;8.12e-08;35!UBERON:0004211;1.87e-07;10!UBERON:0009773;1.87e-07;10!UBERON:0001231;1.87e-07;10!UBERON:0004810;1.87e-07;10!UBERON:0006555;1.93e-07;15!UBERON:0004819;1.93e-07;15!UBERON:0001285;1.93e-07;15!UBERON:0007684;1.93e-07;15!UBERON:0002530;5.10e-07;57 | |||
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| ||
|short_description=p2@SEPT9 | |||
}} | }} |
Latest revision as of 18:07, 17 September 2015
Short description: | p2@SEPT9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SEPT9_5end |
Coexpression cluster: | NA |
Association with transcript: | 20bp_to_ENST00000397613, ENST00000427177, NM_001113491, uc002jts.3, uc010wtk.1_5end |
EntrezGene: | SEPT9 |
HGNC: | 7323 |
UniProt: | F5GWR9Q9UHD8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.64e-54 | 253 |
endodermal cell | 1.38e-23 | 58 |
endo-epithelial cell | 1.36e-18 | 42 |
embryonic cell | 5.10e-14 | 250 |
epithelial cell of alimentary canal | 1.15e-08 | 20 |
kidney cell | 1.58e-08 | 17 |
kidney epithelial cell | 1.58e-08 | 17 |
respiratory epithelial cell | 1.72e-08 | 13 |
mesothelial cell | 2.00e-08 | 19 |
squamous epithelial cell | 2.67e-08 | 63 |
kidney tubule cell | 1.89e-07 | 10 |
nephron tubule epithelial cell | 1.89e-07 | 10 |
epithelial cell of nephron | 2.03e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.60e-34 | 106 |
cell type cancer | 1.39e-27 | 143 |
cancer | 1.25e-16 | 235 |
disease of cellular proliferation | 1.51e-15 | 239 |
adenocarcinoma | 5.72e-10 | 25 |
squamous cell carcinoma | 2.52e-07 | 14 |
disease of anatomical entity | 3.37e-07 | 39 |