FFCP PHASE1:Hg19::chr4:40752000..40752023,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79730 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25857 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=19bp_to_ENST00000473399_5end | |||
|cluster_id=chr4:40752000..40752023,+ | |||
|coexpression_cluster_id=C4412 | |||
|description=CAGE_peak_3_at_NSUN7_5end | |||
|id=chr4:40752000..40752023,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.13e-08!254 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.83e-09;5!CL:0000039;2.29e-08;7!CL:0000586;2.29e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.83e-09,5;CL:0000039,1.59e-08,7;CL:0000586,1.59e-08,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!7.66e-12!106;DOID:0050687!1.60e-09!143 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.05e-09;22!DOID:2994;3.05e-09;22!DOID:3119;7.01e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.21e-13,106;DOID:0050687,5.72e-12,143;DOID:3095,1.25e-09,22;DOID:2994,1.25e-09,22;DOID:3119,2.91e-08,14;DOID:299,7.25e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0000064!5.31e-10!219;UBERON:0000481!7.96e-10!347;UBERON:0000464!1.27e-09!104;UBERON:0007023!3.43e-09!115;UBERON:0004121!1.01e-08!169;UBERON:0000073!1.47e-08!94;UBERON:0001016!1.47e-08!94;UBERON:0003075!2.51e-08!86;UBERON:0007284!2.51e-08!86;UBERON:0000063!2.70e-08!97;UBERON:0000924!2.81e-08!173;UBERON:0006601!2.81e-08!173;UBERON:0000922!6.47e-08!612;UBERON:0000058!8.04e-08!26;UBERON:0002346!1.17e-07!90;UBERON:0000080!2.51e-07!18;UBERON:0002120!2.51e-07!18;UBERON:0004875!2.51e-07!18;UBERON:0005721!2.51e-07!18;UBERON:0005754!2.51e-07!18;UBERON:0007297!2.51e-07!18;UBERON:0000466!3.01e-07!126;UBERON:0005743!3.35e-07!86;UBERON:0000489!3.74e-07!32;UBERON:0004876!4.42e-07!20;UBERON:0003056!4.89e-07!61;UBERON:0000062!5.35e-07!511;UBERON:0000153!5.83e-07!129;UBERON:0007811!5.83e-07!129;UBERON:0003135!7.57e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.86e-14;22!UBERON:0004921;1.03e-13;33!UBERON:0000160;1.77e-12;17!UBERON:0000922;7.51e-12;49!UBERON:0003135;2.25e-08;11!UBERON:0000059;3.60e-08;11!UBERON:0004907;8.56e-08;5!UBERON:0000473;4.42e-07;8!UBERON:0001052;9.32e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.43e-12,17;UBERON:0005409,1.94e-12,25;UBERON:0003135,2.67e-08,11;UBERON:0000059,3.41e-08,11;UBERON:0004907,5.90e-08,5;UBERON:0000473,3.67e-07,8;UBERON:0001052,4.03e-07,4;UBERON:0004921,4.13e-07,118 | |||
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| |||
|short_description=p3@NSUN7 | |||
}} |
Latest revision as of 18:55, 17 September 2015
Short description: | p3@NSUN7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NSUN7_5end |
Coexpression cluster: | C4412_argyrophil_rectum_testis_testicular_iPS_choriocarcinoma_small |
Association with transcript: | 19bp_to_ENST00000473399_5end |
EntrezGene: | NSUN7 |
HGNC: | 25857 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.83e-09 | 5 |
germ line cell | 1.59e-08 | 7 |
germ cell | 1.59e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.43e-12 | 17 |
gastrointestinal system | 1.94e-12 | 25 |
male reproductive organ | 2.67e-08 | 11 |
large intestine | 3.41e-08 | 11 |
lower digestive tract | 5.90e-08 | 5 |
testis | 3.67e-07 | 8 |
rectum | 4.03e-07 | 4 |
subdivision of digestive tract | 4.13e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.21e-13 | 106 |
cell type cancer | 5.72e-12 | 143 |
germ cell and embryonal cancer | 1.25e-09 | 22 |
germ cell cancer | 1.25e-09 | 22 |
gastrointestinal system cancer | 2.91e-08 | 14 |
adenocarcinoma | 7.25e-07 | 25 |