FFCP PHASE1:Hg19::chr13:52586111..52586150,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:52586111..52586150,- to FFCP PHASE1:Hg19::chr13:52586111..52586150,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=540 | |EntrezGene=540 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=870 | |HGNC=870 | ||
|TSSclassifier=strong | |||
|UniProt=P35670,B7ZLR4 | |UniProt=P35670,B7ZLR4 | ||
|association_with_transcript=-481bp_to_ENST00000242839,ENST00000344297,ENST00000400366,NM_000053,NM_001005918,NM_001243182,uc001vfw.2,uc001vfx.2,uc001vfy.2,uc010adv.2,uc010tgt.1,uc010tgu.1,uc010tgv.1_5end | |||
|cluster_id=chr13:52586111..52586150,- | |||
|description=CAGE_peak_1_at_ATP7B_5end | |||
|id=chr13:52586111..52586150,- | |||
|ontology_enrichment_celltype=CL:0000066!8.34e-08!254;CL:0000223!1.68e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.36e-16;12!CL:0000764;1.36e-08;2!CL:0000558;1.36e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.37e-16,12;CL:0000764,2.85e-08,2;CL:0000765,2.85e-08,2;CL:0000050,2.85e-08,2;CL:0000038,2.85e-08,2;CL:0000558,2.85e-08,2;CL:0000547,2.85e-08,2;CL:0000549,2.85e-08,2;CL:0000550,2.85e-08,2;CL:0000552,2.85e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.49e-18;11!UBERON:0009497;2.41e-15;13!UBERON:0003104;2.25e-07;31 | |||
|ontology_enrichment_disease=DOID:305!6.21e-08!106;DOID:0050687!1.43e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.06e-09!57;UBERON:0005068!1.06e-09!57;UBERON:0006241!1.06e-09!57;UBERON:0007135!1.06e-09!57;UBERON:0002616!1.09e-09!59;UBERON:0007023!4.93e-09!115;UBERON:0003075!7.30e-09!86;UBERON:0007284!7.30e-09!86;UBERON:0002346!7.74e-09!90;UBERON:0005743!8.09e-09!86;UBERON:0001017!1.29e-08!82;UBERON:0000073!2.38e-08!94;UBERON:0001016!2.38e-08!94;UBERON:0000955!4.23e-08!69;UBERON:0006238!4.23e-08!69;UBERON:0001869!5.79e-08!32;UBERON:0001893!9.58e-08!34;UBERON:0002020!1.14e-07!34;UBERON:0003528!1.14e-07!34;UBERON:0002791!3.09e-07!33;UBERON:0000956!3.48e-07!25;UBERON:0000203!3.48e-07!25;UBERON:0000064!3.50e-07!219;UBERON:0002619!4.44e-07!22;UBERON:0005177!5.02e-07!107;UBERON:0004732!8.21e-07!13;UBERON:0000481!9.91e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.12e-16;19!UBERON:0006925;1.12e-16;19!UBERON:0002423;3.07e-15;25!UBERON:0002368;1.01e-09;33!UBERON:0002365;2.73e-09;31!UBERON:0002330;2.73e-09;31!UBERON:0000949;6.33e-09;43!UBERON:0002108;4.33e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.13e-16,19;UBERON:0006925,1.13e-16,19;UBERON:0008836,1.13e-16,19;UBERON:0009497,3.08e-15,25;UBERON:0000015,3.08e-15,25;UBERON:0002423,3.08e-15,25;UBERON:0006235,3.08e-15,25;UBERON:0004161,3.08e-15,25;UBERON:0008835,3.68e-14,22;UBERON:0003894,3.68e-14,22;UBERON:0009854,1.81e-13,23;UBERON:0007499,2.99e-12,25;UBERON:0009856,1.03e-11,26;UBERON:0002368,3.97e-10,35;UBERON:0002365,1.52e-09,31;UBERON:0002330,1.52e-09,31;UBERON:0000949,4.08e-09,45;UBERON:0005172,1.45e-08,54;UBERON:0005173,1.45e-08,54;UBERON:0002108,4.50e-08,4;UBERON:0002417,1.85e-07,60;UBERON:0000916,1.85e-07,60;UBERON:0003929,2.97e-07,54 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0.246242116153576,0,0.313454721478088,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0.300091096084402,0,0,0,0.168776332241266,0,0.252433774244115,0.0920498986422993,0,0,0,0,0.193260853163297,0,0,0.609868530647977,1.06023814657188,0.929551542956147,0.518305275076852,0.756962552626885,0.72995471815166,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0.110293972732394,0,0.237270619111097,0,0.196221465125346,0,0,0,0.4115740113314,0,15.2106041786197,10.8110993834539,12.4065880403095,0,1.59884970106048,0.171567810298526,0.219500570817251,1.1240175325762,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0.858486162094873,0,0,0,0,0,0.141775097242386,0,0.290633938513962,0,0,0,0,0,0,0,0.381988425558278,1.17217447210047,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0.602878754119172,0.871533458600294,1.69954085009497,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,0,0.153461973288062,0,0,0.511707249066704,0,1.48418066444991,0,0,0,0,0,0.362578348774867,0.200506470303285,0.0920809889358963,0,0,0,0,0.15403067420883,0,0,0.105551628892876,1.13733384070897,0,0,0,0,0,0.254876273045038,0,0,1.09629938322967,1.0457418040996,0,0.328014645699706,0,7.31591182698828,0,0,0.574265537996172,0,0,0.096670718292122,0,0,0.137836572484531,0,0,0.0852266274161009,0,0,0.576570202095319,0.127612712494584,0,0,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0,0.255897791311334,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,1.08890984861323,6.59006605437454,0.43050537267123,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0.747768497892312,0,0,0,0,0.0711418433484141,0,0,0,0.211673582723883,0,0.280797178113459,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,5.84652965180009,0,0,0.33307196799782,4.22961015263549,0,0.146508179271894,0,0,0,0,0,0,0,0.281338832821026,0.222617410045812,0,1.68900326502395,0,0,16.8794941062365,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,1.77148277162768,0.723578631752448,1.52581736317083,0.663475559587348,0.295547618953547,1.09692698576986,0,0,0.153900517007594,0,4.84184199214926,16.0666183493492,1.19512109114209,0,0.183195186803725,0,0,0,2.16075186470203,0,0.784250137270958,0.335643173951685,1.13852239634511,2.86085842164682,0,0.163232808159148,0.565412285735763,0.216388639742091,0,5.92665682172372,0,0.296521128680622,0,0.104421949505455,0.134802265961354,0.802577647298789,0,0,0,0.971121518136371,0,1.20990716048664,0.61214552326098,0,1.05226393590145,0.72581733978073,0,0.330991955875499,0.941798755221676,0,0.853828638089378,0.138674673013139,1.21491816834592,0,0.174118413160805,0.34945333648406,0,0.0967563312890851,0.219267951258557,0,0.0969890164884194,0.264768380074501,0.451961481561065,0,0,0.253243183823515,0.195551382734803,0.0801588202515337,20.2780345002385,0.19980960958213,0.288180834308212,0,0.686379991447858,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0.599037001496973,0,0,0.134366944973453,0,3.49487848582361,14.2597559976075,13.5162007745113,14.6939725602123,0.885847333632739,0.0846733320657845,0.795229689809303,0.408610218334727,0.482259445395058,0.825236619583403,0.415440338029185,0,0,0.546746009922222,0,0.236417121897595,0.681909645754975,0,0,0.191915197319445,0,0,0.25426853765475,0,0,0,0,1.55975789423744,0,0.339936274560377,8.79313402068495,18.550964447711,0.387848869084652,0.13223260174269,0,0,0,0,0.828478110694391,0,0,0,0,0,0,0,0,0.314108192500469,0,0.122026264901963,0.250381861413,0.573409195690071,0.110929051536852,0.372578417648301,0.138348634936231,0.124980407962107,0,0.285465333544967,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0.450772826991655,0.761610424337591,0,0,0.107410557042488,0,0,0,0,0.336749488765919,0,0.385239660814607,0.643324774124777,0.521988583930423,0,0,0.244736704506468,0.179088841081487,0,0,0,0.192914038270915,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0.107824811396682,0,0.436838552768056,0.169732529954025,0.212574920101683,0,0,0,0,0.80057074828547,0,0,0.385375350578757,0,0,0.205116364240755,0.252071696221718,0.414943514785307,0.807378228159255,1.42769420259154,0.196295437002051,0.235939446695481,0,0.231051332300676,0,0,0,0,0.403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| 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| ||
|short_description=p1@ATP7B | |||
}} | }} |
Latest revision as of 19:17, 17 September 2015
Short description: | p1@ATP7B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ATP7B_5end |
Coexpression cluster: | NA |
Association with transcript: | -481bp_to_ENST00000242839, ENST00000344297, ENST00000400366, NM_000053, NM_001005918, NM_001243182, uc001vfw.2, uc001vfx.2, uc001vfy.2, uc010adv.2, uc010tgt.1, uc010tgu.1, uc010tgv.1_5end |
EntrezGene: | ATP7B |
HGNC: | 870 |
UniProt: | P35670B7ZLR4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.37e-16 | 12 |
erythroid lineage cell | 2.85e-08 | 2 |
erythroblast | 2.85e-08 | 2 |
megakaryocyte-erythroid progenitor cell | 2.85e-08 | 2 |
erythroid progenitor cell | 2.85e-08 | 2 |
reticulocyte | 2.85e-08 | 2 |
proerythroblast | 2.85e-08 | 2 |
basophilic erythroblast | 2.85e-08 | 2 |
polychromatophilic erythroblast | 2.85e-08 | 2 |
orthochromatic erythroblast | 2.85e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
liver | 1.13e-16 | 19 |
digestive gland | 1.13e-16 | 19 |
liver bud | 1.13e-16 | 19 |
epithelium of foregut-midgut junction | 3.08e-15 | 25 |
anatomical boundary | 3.08e-15 | 25 |
hepatobiliary system | 3.08e-15 | 25 |
foregut-midgut junction | 3.08e-15 | 25 |
septum transversum | 3.08e-15 | 25 |
hepatic diverticulum | 3.68e-14 | 22 |
liver primordium | 3.68e-14 | 22 |
digestive tract diverticulum | 1.81e-13 | 23 |
epithelial sac | 2.99e-12 | 25 |
sac | 1.03e-11 | 26 |
endocrine gland | 3.97e-10 | 35 |
exocrine gland | 1.52e-09 | 31 |
exocrine system | 1.52e-09 | 31 |
endocrine system | 4.08e-09 | 45 |
abdomen element | 1.45e-08 | 54 |
abdominal segment element | 1.45e-08 | 54 |
small intestine | 4.50e-08 | 4 |
abdominal segment of trunk | 1.85e-07 | 60 |
abdomen | 1.85e-07 | 60 |
gut epithelium | 2.97e-07 | 54 |