FFCP PHASE1:Hg19::chr6:31540286..31540301,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4049 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6709 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-403bp_to_uc003nuf.2,uc003nug.2,uc003nuh.2,uc010jsr.2_5end | |||
|cluster_id=chr6:31540286..31540301,+ | |||
|description=CAGE_peak_5_at_LTA_5end | |||
|id=chr6:31540286..31540301,+ | |||
|ontology_enrichment_celltype=CL:0002087!1.30e-37!119;CL:0000738!1.43e-36!140;CL:0002031!9.97e-32!124;CL:0000838!2.02e-31!52;CL:0000988!4.45e-31!182;CL:0000542!1.03e-30!53;CL:0000051!1.03e-30!53;CL:0000037!5.60e-28!172;CL:0000566!5.60e-28!172;CL:0002032!3.44e-23!165;CL:0000837!3.44e-23!165;CL:0000945!1.39e-16!24;CL:0000826!1.39e-16!24;CL:0000080!1.52e-15!6;CL:0002057!3.13e-12!42;CL:0000784!8.42e-12!3;CL:0000623!1.05e-11!3;CL:0000825!1.05e-11!3;CL:0000860!3.21e-11!45;CL:0000625!3.87e-11!11;CL:0000084!5.47e-10!25;CL:0000827!5.47e-10!25;CL:0000791!9.36e-09!18;CL:0000789!9.36e-09!18;CL:0002420!9.36e-09!18;CL:0002419!9.36e-09!18;CL:0000790!9.36e-09!18;CL:0000134!1.85e-08!358;CL:0002194!2.48e-08!63;CL:0000576!2.48e-08!63;CL:0000040!2.48e-08!63;CL:0000559!2.48e-08!63;CL:0002320!4.06e-08!365;CL:0002009!5.50e-08!65;CL:0000766!1.62e-07!76;CL:0000839!3.27e-07!70;CL:0000557!4.53e-07!71;CL:0000219!6.37e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000945;6.60e-13;24!CL:0002087;1.63e-07;104!CL:0000542;7.73e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,5.81e-14,177;CL:0002087,6.98e-14,115;CL:0002031,3.02e-13,120;CL:0000945,5.97e-13,24;CL:0000826,5.97e-13,24;CL:0000738,1.60e-11,136;CL:0000838,3.75e-11,52;CL:0000542,6.25e-11,53;CL:0000051,6.25e-11,53;CL:0002032,1.68e-09,161;CL:0000837,1.68e-09,161;CL:0000037,4.83e-09,168 | |||
|ontology_enrichment_development_v019=CL:0000051;7.73e-07;53 | |||
|ontology_enrichment_disease=DOID:0060058!4.40e-12!10 | |||
|ontology_enrichment_disease_v019=DOID:630;5.15e-14;1!DOID:0050177;5.15e-14;1!DOID:0060060;5.15e-14;1!DOID:0060061;5.15e-14;1!DOID:0050427;5.15e-14;1!DOID:8691;5.15e-14;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,4.53e-14,1;DOID:0050177,4.53e-14,1;DOID:0050427,4.53e-14,1;DOID:0060060,5.15e-14,1;DOID:0060061,5.15e-14,1;DOID:8691,5.15e-14,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.59e-13!102;UBERON:0003061!3.59e-13!102;UBERON:0002193!1.08e-12!112;UBERON:0000178!2.50e-08!15;UBERON:0000179!2.50e-08!15;UBERON:0000463!2.50e-08!15;UBERON:0002384!1.18e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;7.00e-12;10!UBERON:0000178;4.22e-08;15!UBERON:0000179;4.22e-08;15!UBERON:0000463;4.22e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,6.50e-12,10;UBERON:0000358,6.50e-12,10;UBERON:0000307,6.50e-12,10;UBERON:0000091,6.50e-12,10;UBERON:0000087,6.50e-12,10;UBERON:0007010,6.50e-12,10;UBERON:0007806,6.50e-12,10;UBERON:0008780,6.50e-12,10;UBERON:0005728,6.50e-12,10;UBERON:0000178,4.02e-08,15;UBERON:0000179,4.02e-08,15;UBERON:0000463,4.02e-08,15;UBERON:0002390,3.31e-07,98;UBERON:0003061,3.31e-07,98 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.13957536094264,1.72411237844886,1.73163718890094,0.786728553697808,0,0,0,0,0,0.0774672005803016,0,0,1.10799081706375,0,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0.344745680736619,0,1.35426486594342,0,0,0,1.83650335422542,0.641858054152187,3.19668562899521,0,0,0,0.870627715885752,0,0.622822248995575,0,0,0,0.605399502633369,0.736555271975129,0.949387162322653,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0.128091319725675,0.130059347559878,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0.236777252044017,0,0.604820229674197,0.802320587350522,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19245312152671,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0.197030760201927,1.2937654491571,0.641715181398742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6001024709939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96521128680622,1.60633120630454,2.29728288912002,0,0,0,0,0,0,0,0,0,0,4.0587323241913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39984875025916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,2.8851164307291 | |||
|short_description=p5@LTA | |||
}} |
Latest revision as of 21:10, 17 September 2015
Short description: | p5@LTA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LTA_5end |
Coexpression cluster: | NA |
Association with transcript: | -403bp_to_uc003nuf.2, uc003nug.2, uc003nuh.2, uc010jsr.2_5end |
EntrezGene: | LTA |
HGNC: | 6709 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 5.81e-14 | 177 |
nongranular leukocyte | 6.98e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 3.02e-13 | 120 |
lymphocyte of B lineage | 5.97e-13 | 24 |
pro-B cell | 5.97e-13 | 24 |
leukocyte | 1.60e-11 | 136 |
lymphoid lineage restricted progenitor cell | 3.75e-11 | 52 |
lymphocyte | 6.25e-11 | 53 |
common lymphoid progenitor | 6.25e-11 | 53 |
hematopoietic oligopotent progenitor cell | 1.68e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.68e-09 | 161 |
hematopoietic stem cell | 4.83e-09 | 168 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 6.50e-12 | 10 |
blastocyst | 6.50e-12 | 10 |
blastula | 6.50e-12 | 10 |
bilaminar disc | 6.50e-12 | 10 |
inner cell mass | 6.50e-12 | 10 |
cleaving embryo | 6.50e-12 | 10 |
connecting stalk | 6.50e-12 | 10 |
inner cell mass derived epiblast | 6.50e-12 | 10 |
extraembryonic mesoderm | 6.50e-12 | 10 |
blood | 4.02e-08 | 15 |
haemolymphatic fluid | 4.02e-08 | 15 |
organism substance | 4.02e-08 | 15 |
hematopoietic system | 3.31e-07 | 98 |
blood island | 3.31e-07 | 98 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 4.53e-14 | 1 |
monogenic disease | 4.53e-14 | 1 |
xeroderma pigmentosum | 4.53e-14 | 1 |
non-Hodgkin lymphoma | 5.15e-14 | 1 |
cutaneous T cell lymphoma | 5.15e-14 | 1 |
mycosis fungoides | 5.15e-14 | 1 |