FFCP PHASE1:Hg19::chr7:29603521..29603533,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:29603521..29603533,+
|short_description=p4@PRR15
|description=CAGE_peak_4_at_PRR15_5end
|association_with_transcript=94bp_to_ENST00000319694,NM_175887,uc00...") |
No edit summary |
||
(13 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=222171 | |EntrezGene=222171 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22310 | |HGNC=22310 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IV56,A4D1A1 | |UniProt=Q8IV56,A4D1A1 | ||
|association_with_transcript=94bp_to_ENST00000319694,NM_175887,uc003tac.1_5end | |||
|cluster_id=chr7:29603521..29603533,+ | |||
|coexpression_cluster_id=C360 | |||
|description=CAGE_peak_4_at_PRR15_5end | |||
|id=chr7:29603521..29603533,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.29e-12!254 | |||
|ontology_enrichment_celltype_v019=CL:0000349;2.58e-27;19!CL:0002577;3.86e-15;3!CL:0002541;1.87e-14;3!CL:0002536;1.06e-10;2!CL:0002554;1.09e-09;2!CL:0002537;1.77e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.26e-27,19;CL:0002577,3.87e-15,3;CL:0002541,1.34e-14,3;CL:0002536,1.06e-10,2;CL:0002554,6.02e-10,2;CL:0002537,1.86e-08,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.56e-14!106;DOID:299!5.02e-10!25;DOID:0050687!1.70e-09!143 | |||
|ontology_enrichment_disease_v019=DOID:299;4.63e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:299,5.08e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.47e-14!14;UBERON:0000158!2.47e-14!14;UBERON:0003124!7.06e-11!7;UBERON:0009569!3.07e-10!113;UBERON:0000077!6.50e-10!130;UBERON:0000466!7.32e-10!126;UBERON:0004119!1.68e-09!169;UBERON:0000925!1.68e-09!169;UBERON:0006595!1.68e-09!169;UBERON:0004921!5.62e-09!129;UBERON:0004185!5.62e-09!129;UBERON:0001007!2.01e-08!155;UBERON:0001555!2.01e-08!155;UBERON:0007026!2.01e-08!155;UBERON:0005177!2.66e-08!107;UBERON:0000478!7.59e-08!24;UBERON:0000464!9.97e-08!104;UBERON:0003100!2.60e-07!41;UBERON:0003064!5.00e-07!37;UBERON:0002100!7.22e-07!216;UBERON:0001987!7.40e-07!4;UBERON:0004340!7.40e-07!4;UBERON:0003886!7.48e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;4.19e-28;10!UBERON:0000158;4.19e-28;10!UBERON:0000478;3.90e-21;24!UBERON:0000305;3.46e-16;7!UBERON:0003124;1.87e-14;3!UBERON:0000920;1.87e-14;3!UBERON:0001987;1.82e-11;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.50e-38,14;UBERON:0000158,5.50e-38,14;UBERON:0003124,7.03e-24,7;UBERON:0000478,3.51e-21,24;UBERON:0000305,3.70e-16,7;UBERON:0000920,1.34e-14,3;UBERON:0004871,4.19e-14,8;UBERON:0001987,1.83e-11,4;UBERON:0004340,1.83e-11,4;UBERON:0004923,1.80e-07,66;UBERON:0002110,8.80e-07,3;UBERON:0006242,8.80e-07,3 | |||
|phase1_expression=0.363356758541113,0,0,1.0007329835313,0,0,0,0,0,0,0,13.1064823278103,10.5506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895037932904712,0,0,0,0,0,0,0,0,0.458426764241994,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0,0,0,0.49333509683432,0,0.67355336034844,0.980771418680752,0,1.72852777344,0,0,0,0,0,0,0,0,0,0,0,0,1.82032272387605,2.87447256726495,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0.237270619111097,0,0,0,0,0,1.6462960453256,1.47008711385542,0,0,0,0,0.614942192715568,0.343135620597051,0.219500570817251,2.24803506515239,0.100528972411631,0,0,0,0,0,1.05667824812239,0,0,0,3.1608175918371,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0.355391948742546,0,0,0,0,0,0,0,0.239624855491583,0,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,14.8532510008667,9.98612637062982,9.97887967987945,0.496215615637554,0.153461973288062,0,0.384417447767103,0,0,0,0,0.177561725313127,0,0,0,0.362578348774867,0,0.184161977871793,0,0,0,0.902399225814824,0.308061348417659,0,0,0.316654886678627,0,0,0,1.54227252690289,0,0.501689773854853,0.764628819135115,2.49322802678617,0.895499018888713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0.571890581771475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.11709188898084,0,0,0,0,2.14870036263921,2.07875276582847,1.53580351049616,0,0,0,0,0,0.597743964753209,0,0,0,0,0,0.269605053441981,1.43216939740487,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0.7812832832557,4.98521999978316,1.44999915086959,0.796554137998498,0,1.41832609060762,0,0,0,0,0,0,0,0,0,0,0.83654246567162,1.23120413606075,0,0,0,0,2.87101043758728,3.57230614267263,3.73124343213044,0,0,0,0,0,0,0,0,0,1.14262965711403,0.848118428603645,0,0,1.50377859655677,3.66618086960175,0,0,0,0,0,0,0,0.978323094660449,0,0,0,0,0.063186579628488,0,0.311064574191741,0,0,0,0,2.56148591426813,0,0.173559738335131,0,0,0.52418000472609,0,0,0.0730893170861856,0,0,0,0.225980740780532,0,0,0,2.73771935828724,0.320635281006135,1.49417096317547,0.19980960958213,3.45817001169854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,0,0.236349546921671,0,0.13480708770837,0.0984274815147488,0,0,0,0.160753148465019,0,0,0.2249738915515,0,0,0,0.86686278029118,0.262272940674991,0.105600336519406,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02652102730598,5.63852017853338,0.213574825135389,0,0,0,0,0,0,0,0,0.306345576763462,0,2.04170325125305,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0.363697318405119,0.107410557042488,0,0,0,0,0,0,0.192619830407303,0.643324774124777,0,0,0,0.734210113519403,0,0.926404341482917,0.219284049578707,0.176689145945881,0.192914038270915,0.337884881306145,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.707818340086442,0,0.462102664601353,0,0,0,0.225630985047772,0,0,0.523813388962845,0,0.147856086217045,0,0,0,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0.227662191351298,0.79832133146375,0,0,0,0,0,0.889851215136553,0.156986185701028,0,0.840816489941367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559277158988962,0.490751168076215,3.16986604953901,0,0,0,0,0.935757853848423,0,0,1.6941912305844,0,0.754814217833368,2.16087642702245,0.655678681511872,1.88126918544609,0,0,0.196308467114945,0,0,0.339854229375634,0,0,0,0,0,0,1.46067277649303,0,0,0,0.0679914901909147,0,0,0,0,0,0,0.218531143927391,0,0.305966489225945,0,0.18378979906969,0,0,0,0,0,0.213233981900981,0.476128862927481,0,0,0.112131862580613,0,0,0.217716747896961,0,0.0673520530145875,3.08405483188508,0.332660356546013,0.244209805832924,0,0,0.988077223172456,0,0.611207220914332,0.406896178315738,0.665756774185513,0,0 | |phase1_expression=0.363356758541113,0,0,1.0007329835313,0,0,0,0,0,0,0,13.1064823278103,10.5506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895037932904712,0,0,0,0,0,0,0,0,0.458426764241994,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0,0,0,0.49333509683432,0,0.67355336034844,0.980771418680752,0,1.72852777344,0,0,0,0,0,0,0,0,0,0,0,0,1.82032272387605,2.87447256726495,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0.237270619111097,0,0,0,0,0,1.6462960453256,1.47008711385542,0,0,0,0,0.614942192715568,0.343135620597051,0.219500570817251,2.24803506515239,0.100528972411631,0,0,0,0,0,1.05667824812239,0,0,0,3.1608175918371,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0.355391948742546,0,0,0,0,0,0,0,0.239624855491583,0,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,14.8532510008667,9.98612637062982,9.97887967987945,0.496215615637554,0.153461973288062,0,0.384417447767103,0,0,0,0,0.177561725313127,0,0,0,0.362578348774867,0,0.184161977871793,0,0,0,0.902399225814824,0.308061348417659,0,0,0.316654886678627,0,0,0,1.54227252690289,0,0.501689773854853,0.764628819135115,2.49322802678617,0.895499018888713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0.571890581771475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.11709188898084,0,0,0,0,2.14870036263921,2.07875276582847,1.53580351049616,0,0,0,0,0,0.597743964753209,0,0,0,0,0,0.269605053441981,1.43216939740487,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0.7812832832557,4.98521999978316,1.44999915086959,0.796554137998498,0,1.41832609060762,0,0,0,0,0,0,0,0,0,0,0.83654246567162,1.23120413606075,0,0,0,0,2.87101043758728,3.57230614267263,3.73124343213044,0,0,0,0,0,0,0,0,0,1.14262965711403,0.848118428603645,0,0,1.50377859655677,3.66618086960175,0,0,0,0,0,0,0,0.978323094660449,0,0,0,0,0.063186579628488,0,0.311064574191741,0,0,0,0,2.56148591426813,0,0.173559738335131,0,0,0.52418000472609,0,0,0.0730893170861856,0,0,0,0.225980740780532,0,0,0,2.73771935828724,0.320635281006135,1.49417096317547,0.19980960958213,3.45817001169854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,0,0.236349546921671,0,0.13480708770837,0.0984274815147488,0,0,0,0.160753148465019,0,0,0.2249738915515,0,0,0,0.86686278029118,0.262272940674991,0.105600336519406,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02652102730598,5.63852017853338,0.213574825135389,0,0,0,0,0,0,0,0,0.306345576763462,0,2.04170325125305,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0.363697318405119,0.107410557042488,0,0,0,0,0,0,0.192619830407303,0.643324774124777,0,0,0,0.734210113519403,0,0.926404341482917,0.219284049578707,0.176689145945881,0.192914038270915,0.337884881306145,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.707818340086442,0,0.462102664601353,0,0,0,0.225630985047772,0,0,0.523813388962845,0,0.147856086217045,0,0,0,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0.227662191351298,0.79832133146375,0,0,0,0,0,0.889851215136553,0.156986185701028,0,0.840816489941367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559277158988962,0.490751168076215,3.16986604953901,0,0,0,0,0.935757853848423,0,0,1.6941912305844,0,0.754814217833368,2.16087642702245,0.655678681511872,1.88126918544609,0,0,0.196308467114945,0,0,0.339854229375634,0,0,0,0,0,0,1.46067277649303,0,0,0,0.0679914901909147,0,0,0,0,0,0,0.218531143927391,0,0.305966489225945,0,0.18378979906969,0,0,0,0,0,0.213233981900981,0.476128862927481,0,0,0.112131862580613,0,0,0.217716747896961,0,0.0673520530145875,3.08405483188508,0.332660356546013,0.244209805832924,0,0,0.988077223172456,0,0.611207220914332,0.406896178315738,0.665756774185513,0,0 | ||
|short_description=p4@PRR15 | |||
}} | }} |
Latest revision as of 04:32, 18 September 2015
Short description: | p4@PRR15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PRR15_5end |
Coexpression cluster: | C360_Placental_Amniotic_amniotic_teratocarcinoma_chorionic_neuroblastoma_H9 |
Association with transcript: | 94bp_to_ENST00000319694, NM_175887, uc003tac.1_5end |
EntrezGene: | PRR15 |
HGNC: | 22310 |
UniProt: | Q8IV56A4D1A1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.26e-27 | 19 |
placental epithelial cell | 3.87e-15 | 3 |
chorionic membrane mesenchymal stem cell | 1.34e-14 | 3 |
amniotic epithelial cell | 1.06e-10 | 2 |
fibroblast of lymphatic vessel | 6.02e-10 | 2 |
amnion mesenchymal stem cell | 1.86e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.50e-38 | 14 |
membranous layer | 5.50e-38 | 14 |
chorion | 7.03e-24 | 7 |
extraembryonic structure | 3.51e-21 | 24 |
amnion | 3.70e-16 | 7 |
egg chorion | 1.34e-14 | 3 |
somatic layer of lateral plate mesoderm | 4.19e-14 | 8 |
placenta | 1.83e-11 | 4 |
allantois | 1.83e-11 | 4 |
organ component layer | 1.80e-07 | 66 |
gallbladder | 8.80e-07 | 3 |
gall bladder primordium | 8.80e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 5.08e-08 | 25 |