FFCP PHASE1:Hg19::chr3:42755652..42755664,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=152206 | |EntrezGene=152206 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26358 | |HGNC=26358 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-11bp_to_ENST00000466031_5end | |association_with_transcript=-11bp_to_ENST00000466031_5end | ||
|cluster_id=chr3:42755652..42755664,- | |||
|coexpression_cluster_id=C41 | |coexpression_cluster_id=C41 | ||
|description=CAGE_peak_5_at_CCDC13_5end | |description=CAGE_peak_5_at_CCDC13_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000243!2.58e-10!15;CL:0000125!2.58e-10!15;CL:0000030!2.58e-10!15;CL:0000339!2.58e-10!15;CL:0000095!2.46e-09!17;CL:0000123!2.46e-09!17;CL:0002274!3.22e-09!5;CL:0000457!3.22e-09!5;CL:0002191!3.22e-09!5;CL:0000097!3.22e-09!5;CL:0000831!3.22e-09!5;CL:0002028!3.22e-09!5;CL:0002319!7.45e-07!25 | |ontology_enrichment_celltype=CL:0000243!2.58e-10!15;CL:0000125!2.58e-10!15;CL:0000030!2.58e-10!15;CL:0000339!2.58e-10!15;CL:0000095!2.46e-09!17;CL:0000123!2.46e-09!17;CL:0002274!3.22e-09!5;CL:0000457!3.22e-09!5;CL:0002191!3.22e-09!5;CL:0000097!3.22e-09!5;CL:0000831!3.22e-09!5;CL:0002028!3.22e-09!5;CL:0002319!7.45e-07!25 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.62e-23;3!UBERON:0006238;2.63e-07;10 | |ontology_enrichment_development_v019=UBERON:0003056;2.62e-23;3!UBERON:0006238;2.63e-07;10 | ||
|ontology_enrichment_disease=DOID:3093!3.59e-14!11 | |ontology_enrichment_disease=DOID:3093!3.59e-14!11 | ||
|ontology_enrichment_disease_v019=DOID:3093;8.38e-07;11 | |ontology_enrichment_disease_v019=DOID:3093;8.38e-07;11 | ||
|ontology_enrichment_disease_v019_2=DOID:3093,8.38e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0000966!1.70e-32!5;UBERON:0005388!1.70e-32!5;UBERON:0001802!1.70e-32!5;UBERON:0000970!1.26e-18!20;UBERON:0002104!8.78e-18!21;UBERON:0000020!2.57e-16!23;UBERON:0001032!1.13e-15!24;UBERON:0004456!1.13e-15!24;UBERON:0000019!2.26e-09!19;UBERON:0000047!2.26e-09!19;UBERON:0004088!2.26e-09!19;UBERON:0003072!2.26e-09!19;UBERON:0003071!2.26e-09!19;UBERON:0004128!2.26e-09!19;UBERON:0001456!1.42e-08!21 | |ontology_enrichment_uberon=UBERON:0000966!1.70e-32!5;UBERON:0005388!1.70e-32!5;UBERON:0001802!1.70e-32!5;UBERON:0000970!1.26e-18!20;UBERON:0002104!8.78e-18!21;UBERON:0000020!2.57e-16!23;UBERON:0001032!1.13e-15!24;UBERON:0004456!1.13e-15!24;UBERON:0000019!2.26e-09!19;UBERON:0000047!2.26e-09!19;UBERON:0004088!2.26e-09!19;UBERON:0003072!2.26e-09!19;UBERON:0003071!2.26e-09!19;UBERON:0004128!2.26e-09!19;UBERON:0001456!1.42e-08!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.40e-14;5!UBERON:0005388;1.40e-14;5!UBERON:0001802;1.40e-14;5!UBERON:0000970;2.41e-14;20!UBERON:0002104;1.02e-13;21!UBERON:0000020;1.25e-12;23!UBERON:0001032;3.75e-12;24!UBERON:0004456;3.75e-12;24 | |ontology_enrichment_uberon_v019=UBERON:0000966;1.40e-14;5!UBERON:0005388;1.40e-14;5!UBERON:0001802;1.40e-14;5!UBERON:0000970;2.41e-14;20!UBERON:0002104;1.02e-13;21!UBERON:0000020;1.25e-12;23!UBERON:0001032;3.75e-12;24!UBERON:0004456;3.75e-12;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.02e-13,21;UBERON:0002104,1.02e-13,21;UBERON:0000966,2.19e-12,6;UBERON:0005388,2.19e-12,6;UBERON:0001802,2.19e-12,6;UBERON:0000020,3.75e-12,24;UBERON:0001032,3.75e-12,24;UBERON:0004456,3.75e-12,24 | |||
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|short_description=p5@CCDC13 | |short_description=p5@CCDC13 | ||
}} | }} |
Latest revision as of 06:45, 18 September 2015
Short description: | p5@CCDC13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CCDC13_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -11bp_to_ENST00000466031_5end |
EntrezGene: | CCDC13 |
HGNC: | 26358 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eye | 1.02e-13 | 21 |
visual system | 1.02e-13 | 21 |
retina | 2.19e-12 | 6 |
photoreceptor array | 2.19e-12 | 6 |
posterior segment of eyeball | 2.19e-12 | 6 |
sense organ | 3.75e-12 | 24 |
sensory system | 3.75e-12 | 24 |
entire sense organ system | 3.75e-12 | 24 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 8.38e-07 | 11 |