FFCP PHASE1:Hg19::chr4:71063785..71063813,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54959 | |EntrezGene=54959 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26043 | |HGNC=26043 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-25bp_to_ENST00000510847_5end | |association_with_transcript=-25bp_to_ENST00000510847_5end | ||
|cluster_id=chr4:71063785..71063813,+ | |||
|coexpression_cluster_id=C37 | |||
|description=CAGE_peak_2_at_ODAM_5end | |description=CAGE_peak_2_at_ODAM_5end | ||
|id=chr4:71063785..71063813,+ | |id=chr4:71063785..71063813,+ | ||
|ontology_enrichment_celltype=CL:0002541!2.55e-07!3;CL:0002150!6.35e-07!3;CL:0000861!6.35e-07!3 | |ontology_enrichment_celltype=CL:0002541!2.55e-07!3;CL:0002150!6.35e-07!3;CL:0000861!6.35e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002537;1.25e-10;5!CL:0000182;1.27e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,1.25e-10,5;CL:0000182,1.35e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.60e-08;11!UBERON:0006298;3.13e-07;1!UBERON:0008801;3.72e-07;1!UBERON:0009497;4.85e-07;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;7.90e-12;2!DOID:178;7.60e-07;1!DOID:326;7.60e-07;1!DOID:3978;7.60e-07;1!DOID:3394;7.60e-07;1!DOID:5844;7.60e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,6.17e-12,2;DOID:178,7.82e-07,1;DOID:326,7.82e-07,1;DOID:3978,7.82e-07,1;DOID:3394,7.82e-07,1;DOID:5844,7.82e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!9.26e-12!14;UBERON:0000158!9.26e-12!14;UBERON:0003124!8.42e-11!7;UBERON:0004119!4.39e-09!169;UBERON:0000925!4.39e-09!169;UBERON:0006595!4.39e-09!169;UBERON:0004921!7.14e-08!129;UBERON:0004185!7.14e-08!129;UBERON:0000077!7.45e-08!130;UBERON:0006947!9.94e-08!3;UBERON:0004054!9.94e-08!3;UBERON:0000478!1.80e-07!24;UBERON:0000476!2.55e-07!3;UBERON:0000920!2.55e-07!3;UBERON:0001007!3.03e-07!155;UBERON:0001555!3.03e-07!155;UBERON:0007026!3.03e-07!155 | |ontology_enrichment_uberon=UBERON:0005631!9.26e-12!14;UBERON:0000158!9.26e-12!14;UBERON:0003124!8.42e-11!7;UBERON:0004119!4.39e-09!169;UBERON:0000925!4.39e-09!169;UBERON:0006595!4.39e-09!169;UBERON:0004921!7.14e-08!129;UBERON:0004185!7.14e-08!129;UBERON:0000077!7.45e-08!130;UBERON:0006947!9.94e-08!3;UBERON:0004054!9.94e-08!3;UBERON:0000478!1.80e-07!24;UBERON:0000476!2.55e-07!3;UBERON:0000920!2.55e-07!3;UBERON:0001007!3.03e-07!155;UBERON:0001555!3.03e-07!155;UBERON:0007026!3.03e-07!155 | ||
|ontology_enrichment_uberon_v019=UBERON:0001829;1.02e-12;2!UBERON:0001044;2.32e-09;6!UBERON:0003293;2.32e-09;6!UBERON:0003294;2.32e-09;6!UBERON:0010047;2.32e-09;6!UBERON:0003408;2.32e-09;6!UBERON:0000167;2.32e-09;6!UBERON:0005631;5.93e-09;10!UBERON:0000158;5.93e-09;10!UBERON:0001723;1.76e-08;3!UBERON:0001033;1.76e-08;3!UBERON:0006947;7.23e-08;3!UBERON:0004054;7.23e-08;3!UBERON:0002365;9.01e-08;31!UBERON:0002330;9.01e-08;31!UBERON:0000305;1.02e-07;7!UBERON:0001736;3.13e-07;1!UBERON:0001831;3.72e-07;1!UBERON:0001567;3.72e-07;1!UBERON:0001041;9.04e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.02e-12,2;UBERON:0001044,2.32e-09,6;UBERON:0003293,2.32e-09,6;UBERON:0003294,2.32e-09,6;UBERON:0010047,2.32e-09,6;UBERON:0000167,2.32e-09,6;UBERON:0004921,1.46e-08,118;UBERON:0001723,1.83e-08,3;UBERON:0001033,1.83e-08,3;UBERON:0010056,1.83e-08,3;UBERON:0001041,3.09e-08,87;UBERON:0002365,4.23e-08,31;UBERON:0002330,4.23e-08,31;UBERON:0006947,8.63e-08,3;UBERON:0004054,8.63e-08,3;UBERON:0000305,1.02e-07,7;UBERON:0002530,1.05e-07,59;UBERON:0001007,2.25e-07,145;UBERON:0001555,2.25e-07,145;UBERON:0007026,2.25e-07,145;UBERON:0001736,3.13e-07,1;UBERON:0006298,3.13e-07,1;UBERON:0001831,3.73e-07,1;UBERON:0001567,3.73e-07,1;UBERON:0008801,3.73e-07,1;UBERON:0004871,8.40e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62671520017326,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,4.91953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,4.3509401852984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.650756789328606,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05854594449042,0,0,0,0,3.34242278632766,17.8178808499583,4.60741053148848,0,0,0,0,0,10.7593913655578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1528195219403,0.179515288819544,0.434589487688032,1.5950057986596,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0,0,0,2.82706142867882,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,1.57833761139756,1.20990716048664,0,0.189559738885464,0,0,0,0,0,0,0.284609546029793,0,0,0.195984794828755,0,1.04836000945218,0,0.387025325156341,0.292357268344742,0.328461828212837,0,0,0.677942222341597,0,0,0,0.586654148204409,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,4.5926170114768,0,0,0,0,1.16495949527454,15.4415037322158,15.823844809184,16.2442540688586,0.393709926058995,0,0,0,0,0,0,0,0,0,0,0.86686278029118,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.13574825135389,2.51526888159466,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,3.85994864474866,0,0.453411851024545,1.389134845943,0,0,0,0.438568099157414,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57144016688853,0,0,0,0,0,0,0,19.7372796068586,0.496211178389294,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.156986185701028,0,0.280272163313789,0,0,0,0,0,6.97448552208752,0,0,0,0,0,205.218450157272,0,0,0.846774100381858,0,0,0,0,8.73537079175662,1.70685094975177,0,0,0,0,0,1.59160620129095,0,0,0,0,0.231522474323834,0.874238242015829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,98.1680666485717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,21.1101642081971,0,0,0,0,6.42836298609466,0.606351566874658,13.7161551175086,6.16019941953506,0.606168477131288,64.1196516210527,0.332660356546013,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62671520017326,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,4.91953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,4.3509401852984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.650756789328606,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05854594449042,0,0,0,0,3.34242278632766,17.8178808499583,4.60741053148848,0,0,0,0,0,10.7593913655578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1528195219403,0.179515288819544,0.434589487688032,1.5950057986596,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0,0,0,2.82706142867882,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,1.57833761139756,1.20990716048664,0,0.189559738885464,0,0,0,0,0,0,0.284609546029793,0,0,0.195984794828755,0,1.04836000945218,0,0.387025325156341,0.292357268344742,0.328461828212837,0,0,0.677942222341597,0,0,0,0.586654148204409,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,4.5926170114768,0,0,0,0,1.16495949527454,15.4415037322158,15.823844809184,16.2442540688586,0.393709926058995,0,0,0,0,0,0,0,0,0,0,0.86686278029118,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.13574825135389,2.51526888159466,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,3.85994864474866,0,0.453411851024545,1.389134845943,0,0,0,0.438568099157414,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57144016688853,0,0,0,0,0,0,0,19.7372796068586,0.496211178389294,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.156986185701028,0,0.280272163313789,0,0,0,0,0,6.97448552208752,0,0,0,0,0,205.218450157272,0,0,0.846774100381858,0,0,0,0,8.73537079175662,1.70685094975177,0,0,0,0,0,1.59160620129095,0,0,0,0,0.231522474323834,0.874238242015829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,98.1680666485717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,21.1101642081971,0,0,0,0,6.42836298609466,0.606351566874658,13.7161551175086,6.16019941953506,0.606168477131288,64.1196516210527,0.332660356546013,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p2@ODAM | |short_description=p2@ODAM | ||
}} | }} |
Latest revision as of 09:42, 18 September 2015
Short description: | p2@ODAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ODAM_5end |
Coexpression cluster: | C37_salivary_submaxillary_parotid_seminal_tongue_ductus_trachea |
Association with transcript: | -25bp_to_ENST00000510847_5end |
EntrezGene: | ODAM |
HGNC: | 26043 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 1.25e-10 | 5 |
hepatocyte | 1.35e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 1.02e-12 | 2 |
saliva-secreting gland | 2.32e-09 | 6 |
gland of oral region | 2.32e-09 | 6 |
gland of foregut | 2.32e-09 | 6 |
oral gland | 2.32e-09 | 6 |
oral cavity | 2.32e-09 | 6 |
subdivision of digestive tract | 1.46e-08 | 118 |
tongue | 1.83e-08 | 3 |
gustatory system | 1.83e-08 | 3 |
future tongue | 1.83e-08 | 3 |
foregut | 3.09e-08 | 87 |
exocrine gland | 4.23e-08 | 31 |
exocrine system | 4.23e-08 | 31 |
male genital duct | 8.63e-08 | 3 |
internal male genitalia | 8.63e-08 | 3 |
amnion | 1.02e-07 | 7 |
gland | 1.05e-07 | 59 |
digestive system | 2.25e-07 | 145 |
digestive tract | 2.25e-07 | 145 |
primitive gut | 2.25e-07 | 145 |
submandibular gland | 3.13e-07 | 1 |
submandibular gland primordium | 3.13e-07 | 1 |
parotid gland | 3.73e-07 | 1 |
cheek | 3.73e-07 | 1 |
parotid gland primordium | 3.73e-07 | 1 |
somatic layer of lateral plate mesoderm | 8.40e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 6.17e-12 | 2 |
vascular disease | 7.82e-07 | 1 |
ischemia | 7.82e-07 | 1 |
extrinsic cardiomyopathy | 7.82e-07 | 1 |
myocardial ischemia | 7.82e-07 | 1 |
myocardial infarction | 7.82e-07 | 1 |