FFCP PHASE1:Hg19::chr10:50818416..50818427,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6572 | |EntrezGene=6572 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10936 | |HGNC=10936 | ||
|TSSclassifier=strong | |||
|UniProt=Q16572 | |UniProt=Q16572 | ||
|association_with_transcript=69bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end | |association_with_transcript=69bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end | ||
|cluster_id=chr10:50818416..50818427,+ | |||
|coexpression_cluster_id=C1313 | |||
|description=CAGE_peak_3_at_SLC18A3_5end | |description=CAGE_peak_3_at_SLC18A3_5end | ||
|id=chr10:50818416..50818427,+ | |id=chr10:50818416..50818427,+ | ||
|ontology_enrichment_celltype=CL:0000349!1.45e-15!3;CL:0002577!1.45e-15!3;CL:0002536!2.31e-10!2;CL:0002537!1.45e-09!5 | |ontology_enrichment_celltype=CL:0000349!1.45e-15!3;CL:0002577!1.45e-15!3;CL:0002536!2.31e-10!2;CL:0002537!1.45e-09!5 | ||
|ontology_enrichment_celltype_v019=CL:0002577;1.51e-54;3!CL:0000349;4.29e-46;19!CL:0002537;3.46e-33;5!CL:0002541;2.63e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,1.81e-54,3;CL:0000349,4.29e-46,19;CL:0002537,3.10e-33,5;CL:0002541,2.63e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!3.75e-16!10;DOID:3095!5.24e-07!22;DOID:2994!5.24e-07!22 | |ontology_enrichment_disease=DOID:171!3.75e-16!10;DOID:3095!5.24e-07!22;DOID:2994!5.24e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:171;4.66e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,4.50e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0005631!8.15e-27!14;UBERON:0000158!8.15e-27!14;UBERON:0000305!3.00e-17!7;UBERON:0004871!4.65e-15!8;UBERON:0000478!6.09e-15!24;UBERON:0002308!2.14e-12!9;UBERON:0000125!2.14e-12!9;UBERON:0001987!8.65e-12!4;UBERON:0004340!8.65e-12!4;UBERON:0003124!1.54e-11!7;UBERON:0003076!1.75e-10!15;UBERON:0003057!1.75e-10!15;UBERON:0002148!2.54e-10!2;UBERON:0009662!2.54e-10!2;UBERON:0001875!4.64e-10!2;UBERON:0006514!4.64e-10!2;UBERON:0000924!1.45e-09!173;UBERON:0006601!1.45e-09!173;UBERON:0002298!2.52e-09!8;UBERON:0002346!3.13e-09!90;UBERON:0001049!2.81e-07!57;UBERON:0005068!2.81e-07!57;UBERON:0006241!2.81e-07!57;UBERON:0007135!2.81e-07!57;UBERON:0000988!3.77e-07!3;UBERON:0006331!3.77e-07!3;UBERON:0002240!3.89e-07!3;UBERON:0001896!6.72e-07!3;UBERON:0005290!6.72e-07!3;UBERON:0010096!6.72e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;3.81e-41;4!UBERON:0000478;1.77e-36;24!UBERON:0005631;3.16e-29;10!UBERON:0000158;3.16e-29;10!UBERON:0000305;6.12e-24;7!UBERON:0002346;1.06e-18;4!UBERON:0000923;1.06e-18;4!UBERON:0010316;1.06e-18;4!UBERON:0005291;1.06e-18;4!UBERON:0002050;3.61e-15;5!UBERON:0005423;3.61e-15;5!UBERON:0003124;2.63e-07;3!UBERON:0000920;2.63e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.48e-62,14;UBERON:0000158,1.48e-62,14;UBERON:0003124,2.27e-41,7;UBERON:0001987,4.37e-41,4;UBERON:0004340,4.37e-41,4;UBERON:0000478,1.77e-36,24;UBERON:0000305,5.66e-24,7;UBERON:0004871,4.50e-21,8;UBERON:0004923,3.94e-13,66;UBERON:0000995,2.21e-08,21;UBERON:0005795,5.01e-08,22;UBERON:0003975,5.01e-08,22;UBERON:0000920,2.63e-07,3;UBERON:0004175,3.97e-07,25 | |||
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|short_description=p3@SLC18A3 | |short_description=p3@SLC18A3 | ||
}} | }} |
Latest revision as of 10:10, 18 September 2015
Short description: | p3@SLC18A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC18A3_5end |
Coexpression cluster: | C1313_Placental_mesothelioma_amniotic_neuroectodermal_renal_chorionic_carcinosarcoma |
Association with transcript: | 69bp_to_ENST00000374115, NM_003055, uc001jhw.2_5end |
EntrezGene: | SLC18A3 |
HGNC: | 10936 |
UniProt: | Q16572 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 1.81e-54 | 3 |
extraembryonic cell | 4.29e-46 | 19 |
amnion mesenchymal stem cell | 3.10e-33 | 5 |
chorionic membrane mesenchymal stem cell | 2.63e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.48e-62 | 14 |
membranous layer | 1.48e-62 | 14 |
chorion | 2.27e-41 | 7 |
placenta | 4.37e-41 | 4 |
allantois | 4.37e-41 | 4 |
extraembryonic structure | 1.77e-36 | 24 |
amnion | 5.66e-24 | 7 |
somatic layer of lateral plate mesoderm | 4.50e-21 | 8 |
organ component layer | 3.94e-13 | 66 |
uterus | 2.21e-08 | 21 |
embryonic uterus | 5.01e-08 | 22 |
internal female genitalia | 5.01e-08 | 22 |
egg chorion | 2.63e-07 | 3 |
internal genitalia | 3.97e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 4.50e-08 | 10 |