FFCP PHASE1:Hg19::chr12:47473707..47473757,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=347902 | |EntrezGene=347902 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24073 | |HGNC=24073 | ||
|TSSclassifier=strong | |||
|UniProt=Q86SJ2 | |UniProt=Q86SJ2 | ||
|association_with_transcript=0bp_to_ENST00000429635,NM_001143668,NM_181847,uc001rpk.2,uc001rpl.2,uc001rpm.2_5end | |association_with_transcript=0bp_to_ENST00000429635,NM_001143668,NM_181847,uc001rpk.2,uc001rpl.2,uc001rpm.2_5end | ||
|cluster_id=chr12:47473707..47473757,- | |||
|coexpression_cluster_id=C893 | |coexpression_cluster_id=C893 | ||
|description=CAGE_peak_1_at_AMIGO2_5end | |description=CAGE_peak_1_at_AMIGO2_5end | ||
|id=chr12:47473707..47473757,- | |id=chr12:47473707..47473757,- | ||
|ontology_enrichment_celltype=CL:0000220!3.78e-09!246;CL:0002321!5.59e-09!248;CL:0000066!2.60e-08!254;CL:0000055!1.22e-07!180 | |ontology_enrichment_celltype=CL:0000220!3.78e-09!246;CL:0002321!5.59e-09!248;CL:0000066!2.60e-08!254;CL:0000055!1.22e-07!180 | ||
|ontology_enrichment_celltype_v019=CL:1000507;2.81e-07;10!CL:1000494;2.81e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,7.87e-09,250;CL:0000066,8.93e-09,253;CL:1000507,2.73e-07,10;CL:1000494,2.73e-07,10;CL:0002076,3.40e-07,42;CL:0000359,9.88e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:120!2.84e-08!27;DOID:193!6.14e-08!29;DOID:2394!2.10e-07!14 | |ontology_enrichment_disease=DOID:120!2.84e-08!27;DOID:193!6.14e-08!29;DOID:2394!2.10e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:120;1.32e-08;27!DOID:193;3.50e-08;29!DOID:2394;2.27e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:120,1.05e-08,27;DOID:193,2.84e-08,29;DOID:2394,2.07e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!3.98e-14!365;UBERON:0002100!1.57e-10!216;UBERON:0000119!1.75e-09!312;UBERON:0000481!1.87e-09!347;UBERON:0000483!4.01e-09!309;UBERON:0003886!5.18e-09!63;UBERON:0003914!1.45e-08!118;UBERON:0004111!6.79e-08!241;UBERON:0000464!8.87e-08!104;UBERON:0000025!1.01e-07!194;UBERON:0000466!2.60e-07!126;UBERON:0001008!7.14e-07!45;UBERON:0002553!7.94e-07!70;UBERON:0006554!8.61e-07!44 | |ontology_enrichment_uberon=UBERON:0000475!3.98e-14!365;UBERON:0002100!1.57e-10!216;UBERON:0000119!1.75e-09!312;UBERON:0000481!1.87e-09!347;UBERON:0000483!4.01e-09!309;UBERON:0003886!5.18e-09!63;UBERON:0003914!1.45e-08!118;UBERON:0004111!6.79e-08!241;UBERON:0000464!8.87e-08!104;UBERON:0000025!1.01e-07!194;UBERON:0000466!2.60e-07!126;UBERON:0001008!7.14e-07!45;UBERON:0002553!7.94e-07!70;UBERON:0006554!8.61e-07!44 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.81e-07;10!UBERON:0009773;2.81e-07;10!UBERON:0001231;2.81e-07;10!UBERON:0004810;2.81e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,6.52e-11,199;UBERON:0003914,3.17e-09,117;UBERON:0000119,6.35e-08,309;UBERON:0004111,1.15e-07,240;UBERON:0000483,1.38e-07,306;UBERON:0000025,2.49e-07,192;UBERON:0004810,2.73e-07,10;UBERON:0009569,4.97e-07,112 | |||
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| ||
|short_description=p1@AMIGO2 | |short_description=p1@AMIGO2 | ||
}} | }} |
Latest revision as of 12:14, 18 September 2015
Short description: | p1@AMIGO2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AMIGO2_5end |
Coexpression cluster: | C893_osteoclastoma_Urothelial_tubular_nonsmall_Mesenchymal_Renal_hepatic |
Association with transcript: | 0bp_to_ENST00000429635, NM_001143668, NM_181847, uc001rpk.2, uc001rpl.2, uc001rpm.2_5end |
EntrezGene: | AMIGO2 |
HGNC: | 24073 |
UniProt: | Q86SJ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 7.87e-09 | 250 |
epithelial cell | 8.93e-09 | 253 |
kidney tubule cell | 2.73e-07 | 10 |
nephron tubule epithelial cell | 2.73e-07 | 10 |
endo-epithelial cell | 3.40e-07 | 42 |
vascular associated smooth muscle cell | 9.88e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
trunk | 6.52e-11 | 199 |
epithelial tube | 3.17e-09 | 117 |
cell layer | 6.35e-08 | 309 |
anatomical conduit | 1.15e-07 | 240 |
epithelium | 1.38e-07 | 306 |
tube | 2.49e-07 | 192 |
nephron tubule epithelium | 2.73e-07 | 10 |
subdivision of trunk | 4.97e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 1.05e-08 | 27 |
reproductive organ cancer | 2.84e-08 | 29 |
ovarian cancer | 2.07e-07 | 14 |