FFCP PHASE1:Hg19::chr12:47473904..47473917,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=347902 | |EntrezGene=347902 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24073 | |HGNC=24073 | ||
|TSSclassifier=strong | |||
|UniProt=Q86SJ2 | |UniProt=Q86SJ2 | ||
|association_with_transcript=-170bp_to_ENST00000429635,NM_001143668,NM_181847,uc001rpk.2,uc001rpl.2,uc001rpm.2_5end | |association_with_transcript=-170bp_to_ENST00000429635,NM_001143668,NM_181847,uc001rpk.2,uc001rpl.2,uc001rpm.2_5end | ||
|cluster_id=chr12:47473904..47473917,- | |||
|coexpression_cluster_id=C893 | |||
|description=CAGE_peak_6_at_AMIGO2_5end | |description=CAGE_peak_6_at_AMIGO2_5end | ||
|id=chr12:47473904..47473917,- | |id=chr12:47473904..47473917,- | ||
|ontology_enrichment_celltype=CL:0000066!6.32e-13!254;CL:0000220!5.03e-10!246;CL:0002076!6.10e-10!43;CL:0002321!1.19e-09!248;CL:0000223!5.01e-07!59 | |ontology_enrichment_celltype=CL:0000066!6.32e-13!254;CL:0000220!5.03e-10!246;CL:0002076!6.10e-10!43;CL:0002321!1.19e-09!248;CL:0000223!5.01e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002076;3.78e-09;42!CL:1000507;4.07e-09;10!CL:1000494;4.07e-09;10!CL:1000449;1.39e-08;15!CL:0000244;2.60e-07;4!CL:0000731;2.60e-07;4!CL:1000497;2.91e-07;17!CL:0002518;2.91e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.52e-14,253;CL:0002076,4.28e-12,42;CL:0000223,1.32e-09,58;CL:1000507,5.50e-09,10;CL:1000494,5.50e-09,10;CL:1000449,1.53e-08,15;CL:0000244,2.96e-07,4;CL:0000731,2.96e-07,4;CL:1000497,3.17e-07,17;CL:0002518,3.17e-07,17;CL:0002321,7.66e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:120!3.29e-12!27;DOID:193!2.58e-11!29;DOID:2394!2.76e-08!14 | |ontology_enrichment_disease=DOID:120!3.29e-12!27;DOID:193!2.58e-11!29;DOID:2394!2.76e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:120;1.49e-12;27!DOID:193;2.57e-11;29!DOID:2394;1.44e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:120,1.47e-12,27;DOID:193,2.54e-11,29;DOID:2394,2.05e-10,14;DOID:299,8.89e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0003886!9.30e-13!63;UBERON:0000475!1.38e-12!365;UBERON:0002100!1.93e-11!216;UBERON:0000464!6.11e-11!104;UBERON:0000481!2.81e-10!347;UBERON:0003100!3.40e-10!41;UBERON:0000466!3.56e-10!126;UBERON:0002553!4.04e-10!70;UBERON:0001008!1.67e-09!45;UBERON:0005156!2.12e-09!59;UBERON:0000990!2.12e-09!59;UBERON:0006554!3.08e-09!44;UBERON:0002323!7.79e-09!46;UBERON:0003134!1.33e-08!37;UBERON:0000474!1.33e-08!37;UBERON:0003104!1.72e-08!238;UBERON:0009142!1.72e-08!238;UBERON:0003133!5.81e-08!48;UBERON:0003064!5.97e-08!37;UBERON:0009569!8.18e-08!113;UBERON:0004458!1.50e-07!49;UBERON:0001048!2.13e-07!168;UBERON:0000992!2.92e-07!13;UBERON:0000119!2.92e-07!312;UBERON:0000058!5.02e-07!26;UBERON:0000483!5.35e-07!309;UBERON:0003914!5.68e-07!118;UBERON:0004119!6.91e-07!169;UBERON:0000925!6.91e-07!169;UBERON:0006595!6.91e-07!169;UBERON:0005911!7.27e-07!82;UBERON:0000468!8.28e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.53e-09;30!UBERON:0001008;1.53e-09;30!UBERON:0004211;4.07e-09;10!UBERON:0009773;4.07e-09;10!UBERON:0001231;4.07e-09;10!UBERON:0004810;4.07e-09;10!UBERON:0000365;1.38e-08;5!UBERON:0006555;1.39e-08;15!UBERON:0004819;1.39e-08;15!UBERON:0001285;1.39e-08;15!UBERON:0007684;1.39e-08;15!UBERON:0000992;1.85e-07;13!UBERON:0002118;1.88e-07;5!UBERON:0000486;3.71e-07;12!UBERON:0005910;5.19e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,5.50e-09,10;UBERON:0000365,1.44e-08,5;UBERON:0004211,1.53e-08,15;UBERON:0009773,1.53e-08,15;UBERON:0001231,1.53e-08,15;UBERON:0001285,1.53e-08,15;UBERON:0007684,1.53e-08,15;UBERON:0004208,1.53e-08,15;UBERON:0006555,7.69e-08,16;UBERON:0004819,7.69e-08,16;UBERON:0003886,1.18e-07,54;UBERON:0002118,1.29e-07,5;UBERON:0000992,1.49e-07,13;UBERON:0003914,2.65e-07,117;UBERON:0005911,5.14e-07,82;UBERON:0005910,5.34e-07,6;UBERON:0002323,5.46e-07,46;UBERON:0005177,8.03e-07,101 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.140954404095971,0,1.34088328328186,0,2.53299878168311,0,0.261185628199839,2.7030733015166,2.79120467188971,0,0,0,0,0.672325146451775,0.602694528023977,0,0.487932798790507,0.369363174230364,1.22400414746552,0,0,0.136874425072884,0.502170558379211,0,0,0,0,0,0,0.919421224478927,3.31326510656075,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0.32592226663359,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0.670700859703636,0,0,0.50133791063589,0.579386075843295,0,0,0.472674085820339,1.99556457716308,1.40535657109002,0.327447688744282,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0,0,0,1.69592382577203,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,2.61656431285521,0,1.01304409331664,0.132409180813219,0,0.709336764396714,0.560677600142307,3.20246987189115,4.44001587150888,0,0.808264032418128,0.490385709340376,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,1.18800285728205,0.247266929278557,0.910161361938026,0,0.168336113954066,0,0,0.438977620880838,0.30648779579902,0.150238058906597,1.47461838108027,0.717558542755448,0.640672166455702,0.847727604638247,1.80054657650641,1.03052529238439,1.28820270022815,2.60563598864226,0,1.16924406193438,1.00973509697646,1.01254888506529,0.323292113637624,0.355009592516614,1.0075209822764,0.67824236924195,2.70565194428616,1.36373060295417,3.72845974005705,0,0,0.232387885739037,0.310983165046111,0.504641701751257,0,0,0,0,0,0,0,0.168584690078102,0.482022059766964,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,0,0.122988438543114,1.02940686179115,2.08525542276389,0,0.904760751704678,0.648119116109707,0,0,0,0,1.40890433082986,0,0,0,0.790204397959275,2.57545848628462,0,0,0,2.81201501960331,5.54341023056236,3.68615252830205,1.79117045405697,2.90633938513962,4.21720947081732,0,0,0.414656231081544,0,0.6312121671319,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0.36669142910475,2.19761916788222,0,0,2.12750493267896,1.04007436911366,0.257207374262142,0,0,0,0,0,0,0,0.791951872933429,0.904318131178758,0,1.89948683245908,0,0,0,5.75099653179798,0,1.42636905040718,0.434343920002738,0.205476322550383,0.716243852959582,0,0,0.215627574859517,0,1.27047312111232,0,0,0.335032530668698,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0.178428988797162,0,0.585707074963566,0,0,0,3.32112799267718,3.13427586520895,0.0868836144680828,0,0,0,0,0.106727557803444,0,0,0,0.496215615637554,0.61384789315225,1.40330047216537,0.512556597022804,0.511707249066704,3.69964018630297,0,0,0,0,0.519254429183621,0,0,5.21316822788541,0.184161977871793,0.574072240823034,0.546273504020151,0.393373244878272,5.41439535488894,4.23584354074281,5.49044838423799,5.84556898613043,5.27758144464378,0,0,3.88648648983851,0,2.70946437543853,0.501689773854853,1.01950509218015,0.831076008928724,4.92524460388792,0,0,0,0.656029291399411,0.976135183992909,0,0.366277859273374,0.495056999523528,2.29706215198469,1.30012049207304,1.6068392984416,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0.661139661443912,2.30628080838127,1.78657797492418,0.30347334256665,1.39453664789186,0.62962469366128,1.3940745403212,0,0.532306030317022,0,1.11194531462352,2.14687330112987,0.372158369359667,0.316379424718726,0.38126038784765,0,0,0,0.78494864019923,0,0.823611089208164,0.353437207037059,0.404364963146632,0,1.26377536871694,0,1.94970791705028,1.05650146756755,1.09199929126389,0.282810863907425,0,1.10273068709225,0.66343897524122,1.31535265576129,0,0,0.811641507850816,1.8589409885985,1.40847801266121,0.717056761020258,0.392996164052485,1.426684205925,0,0,0,0,0.349934720244983,1.53955380360819,0,3.26672954583968,0.188287601553558,7.74909670808214,6.73885902670502,3.10401107475673,7.81059560703662,0,0,0.569647187174163,0,0,0,0,0,3.20472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0.890469640183247,0,0,0.996239941255349,0.552567831062295,0.503865495708552,3.78394125257973,0,0,8.53749335899605,1.07412704805365,0,0.197286811273867,0,0,0,0.0927680981618513,0,0.520855522170466,0.174919999992391,0,1.4793148277115,1.01701460117107,0,0,0,0,0,0.482385754501632,0,0.110579259931225,0.295547618953547,0.219385397153973,0,0.139423744278603,0.461701551022782,0.91153644677601,0,0.538545866458633,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,2.95397290339238,3.91758739581955,0,0,0,0.442287822516696,1.22206028986725,0,0,0,0,0,0.234264445725339,0,0.19566461893209,0,0,0,0,0.252746318513952,0,0.103688191397247,1.99396161812156,0.992975867626496,4.08112793929393,3.58417289318877,7.39984819677461,0.554698692052555,1.21491816834592,2.15583274311631,1.21882889212564,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,5.34463506122329,1.19228767021794,0.0633107959558787,1.36885967914362,1.92381168603681,1.06726497369676,1.59847687665704,1.87317542300338,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| ||
|short_description=p6@AMIGO2 | |short_description=p6@AMIGO2 | ||
}} | }} |
Latest revision as of 12:15, 18 September 2015
Short description: | p6@AMIGO2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_AMIGO2_5end |
Coexpression cluster: | C893_osteoclastoma_Urothelial_tubular_nonsmall_Mesenchymal_Renal_hepatic |
Association with transcript: | -170bp_to_ENST00000429635, NM_001143668, NM_181847, uc001rpk.2, uc001rpl.2, uc001rpm.2_5end |
EntrezGene: | AMIGO2 |
HGNC: | 24073 |
UniProt: | Q86SJ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.52e-14 | 253 |
endo-epithelial cell | 4.28e-12 | 42 |
endodermal cell | 1.32e-09 | 58 |
kidney tubule cell | 5.50e-09 | 10 |
nephron tubule epithelial cell | 5.50e-09 | 10 |
epithelial cell of nephron | 1.53e-08 | 15 |
transitional epithelial cell | 2.96e-07 | 4 |
urothelial cell | 2.96e-07 | 4 |
kidney cell | 3.17e-07 | 17 |
kidney epithelial cell | 3.17e-07 | 17 |
embryonic cell | 7.66e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 5.50e-09 | 10 |
urothelium | 1.44e-08 | 5 |
nephron epithelium | 1.53e-08 | 15 |
renal tubule | 1.53e-08 | 15 |
nephron tubule | 1.53e-08 | 15 |
nephron | 1.53e-08 | 15 |
uriniferous tubule | 1.53e-08 | 15 |
nephrogenic mesenchyme | 1.53e-08 | 15 |
excretory tube | 7.69e-08 | 16 |
kidney epithelium | 7.69e-08 | 16 |
body cavity precursor | 1.18e-07 | 54 |
right ovary | 1.29e-07 | 5 |
female gonad | 1.49e-07 | 13 |
epithelial tube | 2.65e-07 | 117 |
endo-epithelium | 5.14e-07 | 82 |
transitional epithelium | 5.34e-07 | 6 |
body cavity | 5.46e-07 | 46 |
trunk region element | 8.03e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 1.47e-12 | 27 |
reproductive organ cancer | 2.54e-11 | 29 |
ovarian cancer | 2.05e-10 | 14 |
adenocarcinoma | 8.89e-07 | 25 |