FFCP PHASE1:Hg19::chr12:47473920..47473939,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=347902 | |EntrezGene=347902 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24073 | |HGNC=24073 | ||
|TSSclassifier=strong | |||
|UniProt=Q86SJ2 | |UniProt=Q86SJ2 | ||
|association_with_transcript=-186bp_to_ENST00000429635,NM_001143668,NM_181847,uc001rpk.2,uc001rpl.2,uc001rpm.2_5end | |association_with_transcript=-186bp_to_ENST00000429635,NM_001143668,NM_181847,uc001rpk.2,uc001rpl.2,uc001rpm.2_5end | ||
|cluster_id=chr12:47473920..47473939,- | |||
|coexpression_cluster_id=C893 | |coexpression_cluster_id=C893 | ||
|description=CAGE_peak_5_at_AMIGO2_5end | |description=CAGE_peak_5_at_AMIGO2_5end | ||
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|ontology_enrichment_celltype=CL:0000066!4.81e-16!254;CL:0002076!6.37e-11!43;CL:0000220!9.31e-11!246;CL:0002321!2.33e-10!248;CL:0000223!2.77e-07!59 | |ontology_enrichment_celltype=CL:0000066!4.81e-16!254;CL:0002076!6.37e-11!43;CL:0000220!9.31e-11!246;CL:0002321!2.33e-10!248;CL:0000223!2.77e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:1000507;1.10e-08;10!CL:1000494;1.10e-08;10!CL:0002368;3.64e-08;13!CL:0002076;6.54e-08;42!CL:1000449;6.76e-08;15 | |ontology_enrichment_celltype_v019=CL:1000507;1.10e-08;10!CL:1000494;1.10e-08;10!CL:0002368;3.64e-08;13!CL:0002076;6.54e-08;42!CL:1000449;6.76e-08;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.05e-15,253;CL:0002076,6.45e-10,42;CL:1000507,1.18e-08,10;CL:1000494,1.18e-08,10;CL:0000223,1.69e-08,58;CL:0002368,3.80e-08,13;CL:1000449,6.39e-08,15;CL:0002321,1.54e-07,250 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:120!7.26e-11!27;DOID:193!2.17e-10!29;DOID:2394!2.19e-07!14 | |ontology_enrichment_disease=DOID:120!7.26e-11!27;DOID:193!2.17e-10!29;DOID:2394!2.19e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;7.72e-11;14!DOID:120;6.37e-10;27!DOID:193;6.75e-09;29 | |ontology_enrichment_disease_v019=DOID:2394;7.72e-11;14!DOID:120;6.37e-10;27!DOID:193;6.75e-09;29 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,2.44e-11,14;DOID:120,2.20e-10,27;DOID:193,2.58e-09,29 | |||
|ontology_enrichment_uberon=UBERON:0002100!1.25e-13!216;UBERON:0000464!4.03e-13!104;UBERON:0000475!4.53e-12!365;UBERON:0000466!7.63e-12!126;UBERON:0003886!8.61e-12!63;UBERON:0006554!1.92e-09!44;UBERON:0002553!2.26e-09!70;UBERON:0005153!2.52e-09!37;UBERON:0005157!4.04e-09!51;UBERON:0009569!4.36e-09!113;UBERON:0001008!6.02e-09!45;UBERON:0003104!6.77e-09!238;UBERON:0009142!6.77e-09!238;UBERON:0005911!9.68e-09!82;UBERON:0003064!1.89e-08!37;UBERON:0000481!2.44e-08!347;UBERON:0000058!6.13e-08!26;UBERON:0000119!8.59e-08!312;UBERON:0005156!1.59e-07!59;UBERON:0000990!1.59e-07!59;UBERON:0000483!1.63e-07!309;UBERON:0000468!1.86e-07!659;UBERON:0003100!3.02e-07!41;UBERON:0005256!3.29e-07!143;UBERON:0002323!3.58e-07!46 | |ontology_enrichment_uberon=UBERON:0002100!1.25e-13!216;UBERON:0000464!4.03e-13!104;UBERON:0000475!4.53e-12!365;UBERON:0000466!7.63e-12!126;UBERON:0003886!8.61e-12!63;UBERON:0006554!1.92e-09!44;UBERON:0002553!2.26e-09!70;UBERON:0005153!2.52e-09!37;UBERON:0005157!4.04e-09!51;UBERON:0009569!4.36e-09!113;UBERON:0001008!6.02e-09!45;UBERON:0003104!6.77e-09!238;UBERON:0009142!6.77e-09!238;UBERON:0005911!9.68e-09!82;UBERON:0003064!1.89e-08!37;UBERON:0000481!2.44e-08!347;UBERON:0000058!6.13e-08!26;UBERON:0000119!8.59e-08!312;UBERON:0005156!1.59e-07!59;UBERON:0000990!1.59e-07!59;UBERON:0000483!1.63e-07!309;UBERON:0000468!1.86e-07!659;UBERON:0003100!3.02e-07!41;UBERON:0005256!3.29e-07!143;UBERON:0002323!3.58e-07!46 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.10e-08;10!UBERON:0009773;1.10e-08;10!UBERON:0001231;1.10e-08;10!UBERON:0004810;1.10e-08;10!UBERON:0006554;1.39e-08;30!UBERON:0001008;1.39e-08;30!UBERON:0000992;6.30e-08;13!UBERON:0006555;6.76e-08;15!UBERON:0004819;6.76e-08;15!UBERON:0001285;6.76e-08;15!UBERON:0007684;6.76e-08;15!UBERON:0000365;6.96e-08;5!UBERON:0005911;1.99e-07;36!UBERON:0000486;6.09e-07;12 | |ontology_enrichment_uberon_v019=UBERON:0004211;1.10e-08;10!UBERON:0009773;1.10e-08;10!UBERON:0001231;1.10e-08;10!UBERON:0004810;1.10e-08;10!UBERON:0006554;1.39e-08;30!UBERON:0001008;1.39e-08;30!UBERON:0000992;6.30e-08;13!UBERON:0006555;6.76e-08;15!UBERON:0004819;6.76e-08;15!UBERON:0001285;6.76e-08;15!UBERON:0007684;6.76e-08;15!UBERON:0000365;6.96e-08;5!UBERON:0005911;1.99e-07;36!UBERON:0000486;6.09e-07;12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.18e-08,10;UBERON:0000992,2.63e-08,13;UBERON:0003886,5.66e-08,54;UBERON:0000365,5.98e-08,5;UBERON:0004211,6.39e-08,15;UBERON:0009773,6.39e-08,15;UBERON:0001231,6.39e-08,15;UBERON:0001285,6.39e-08,15;UBERON:0007684,6.39e-08,15;UBERON:0004208,6.39e-08,15;UBERON:0002100,7.55e-08,199;UBERON:0005911,8.09e-08,82;UBERON:0006555,2.96e-07,16;UBERON:0004819,2.96e-07,16 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.845726424575827,1.0007329835313,0.446961094427288,0,2.53299878168311,0,0,1.72013755551056,0.697801167972428,0,0,0,0,1.34465029290355,1.20538905604795,2.92124036154949,0,0.123121058076788,0.612002073732759,0,0.286235987131057,0.136874425072884,0.627713197974014,0,0,0,0,0,0.154816123316076,6.43594857135249,4.2168828628955,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0,0,0,0.189069634328136,1.10864698731282,0.790513071238134,0.0654895377488563,2.18577172975525,1.11235332835329,0,0.174129737299267,0.132957960518865,0,0,0,0,0.860234595106124,0,0.56530794192401,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,1.3082821564276,0.496971951695318,0.759783069987479,0.264818361626438,0.286836620748814,0,0,2.1349799145941,2.96001058100592,0.311211035399766,0.942974704487816,0,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,1.5324389789951,0.150238058906597,1.81491493056034,0.179389635688862,0.85422955527427,0.635795703478686,1.20036438433761,0.92747276314595,3.86460810068444,3.53622027030021,0.168776332241266,1.75386609290158,0.252433774244115,1.47279837827679,0,1.42003837006646,1.91428986632517,1.18692414617341,3.86521706326594,4.09119180886252,5.44928731239107,0,0,0.116193942869518,0.207322110030741,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,1.2347220339942,0,0,0,0,0,0,0.857839051492628,3.07300799144152,1.1240175325762,0.201057944823262,0.740707561268237,0,0,2.88662684050547,0,1.05667824812239,0,0,0,2.37061319387782,0,0,0,0,1.87467667973554,5.71139235876122,2.97727704209012,2.7763142037883,1.74380363108377,3.06706143332169,0,0,0.621984346622316,0.864719720501769,0.6312121671319,0,0,0,0,0,0,0,0.224262168690721,0.87192013766656,0.07333828582095,6.98067265092,0,0,2.6593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0.791951872933429,2.41151501647669,2.61460037580088,1.59956785891291,0,0,0,8.62649479769697,0,1.42636905040718,1.30303176000821,0,0.716243852959582,0,0,0,0,0.76228387266739,0,0,0.502548796003046,0,0,0,0,0.12269149171914,0.500170521059677,0,0,1.07057393278297,0,0.234282829985426,0,0,0,3.32112799267718,2.21243002250044,0.260650843404249,0,0.343143423810856,0,0,0,0,0,0.30239029332968,1.48864684691266,0.767309866440312,0.841980283299221,0.384417447767103,2.55853624533352,4.50390979202101,0,0,0,0.0821271560138091,0,0.116210378459959,0.120859449591622,4.81215528727884,0.460404944679482,1.03333003348146,0.546273504020151,0.393373244878272,3.60959690325929,8.62571775569445,3.13739907670742,4.38417673959782,6.12199447578679,0,0,5.82972973475776,1.54227252690289,4.87703587578935,4.01351819083883,0.509752546090077,0.831076008928724,4.70136984916574,0,0,0,0,1.62689197332152,0.103041011647722,0.824125183365091,0.495056999523528,7.46545199395024,2.60024098414608,1.6068392984416,0.193341436584244,0,0,0,0.107420244868274,0,0,0.178064071293475,1.32227932288782,2.69066094311149,3.06270509987002,0.2023155617111,0,0.31481234683064,0,2.15623506123262,0.532306030317022,0.869932992075073,1.48259375283136,3.72124705529177,0.372158369359667,0.316379424718726,0.762520775695299,0,0,0,2.35484592059769,0.719489830333259,0.274537029736055,0.235624804691373,0.404364963146632,0,1.26377536871694,0,2.19342140668156,1.05650146756755,1.9109987597118,0.424216295861138,0,0.551365343546124,0.66343897524122,0.438450885253763,0,0,1.42037263873893,0.6196469961995,1.12678241012897,0.573645408816206,0.589494246078727,1.07001315444375,0,0,0,0,0,2.59799704358883,3.35151137767894,4.3556393944529,0.376575203107117,3.87454835404107,3.36942951335251,6.65145230305014,11.9456168107619,0,0,0,0,0.411362273086194,0,0,0,4.91390727186376,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0.779160935160341,0,0,1.39473591775749,0,0.251932747854276,3.78394125257973,0,0.311039587661807,10.6044654353846,1.07412704805365,0,0.591860433821602,0,0,0,0,0,1.5625665665114,0.0874599999961957,0,1.82069517256799,1.27126825146383,0.709163045303809,0,0,0,0,0.361789315876224,0,0,0,0.438770794307945,0,0.139423744278603,0.692552326534174,1.36730467016401,0,0.179515288819544,0,0,0.732780747214898,0.533034776018635,0,0,0,0,0,0,0,0,3.58696709697646,6.52931232636591,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,1.20990716048664,0,0.379119477770928,0,0,0.664653872707185,1.323967823502,5.33685961292283,1.19472429772959,9.96133411104275,0.832048038078832,1.90915712168644,3.5277263069176,0.957651272384428,0.873633341210151,0,0,0.0730893170861856,0.0821154570532092,0.0969890164884194,0,0.451961481561065,4.65942543798953,0.596143835108969,0.253243183823515,1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| ||
|short_description=p5@AMIGO2 | |short_description=p5@AMIGO2 | ||
}} | }} |
Latest revision as of 12:16, 18 September 2015
Short description: | p5@AMIGO2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_AMIGO2_5end |
Coexpression cluster: | C893_osteoclastoma_Urothelial_tubular_nonsmall_Mesenchymal_Renal_hepatic |
Association with transcript: | -186bp_to_ENST00000429635, NM_001143668, NM_181847, uc001rpk.2, uc001rpl.2, uc001rpm.2_5end |
EntrezGene: | AMIGO2 |
HGNC: | 24073 |
UniProt: | Q86SJ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.05e-15 | 253 |
endo-epithelial cell | 6.45e-10 | 42 |
kidney tubule cell | 1.18e-08 | 10 |
nephron tubule epithelial cell | 1.18e-08 | 10 |
endodermal cell | 1.69e-08 | 58 |
respiratory epithelial cell | 3.80e-08 | 13 |
epithelial cell of nephron | 6.39e-08 | 15 |
embryonic cell | 1.54e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 1.18e-08 | 10 |
female gonad | 2.63e-08 | 13 |
body cavity precursor | 5.66e-08 | 54 |
urothelium | 5.98e-08 | 5 |
nephron epithelium | 6.39e-08 | 15 |
renal tubule | 6.39e-08 | 15 |
nephron tubule | 6.39e-08 | 15 |
nephron | 6.39e-08 | 15 |
uriniferous tubule | 6.39e-08 | 15 |
nephrogenic mesenchyme | 6.39e-08 | 15 |
trunk | 7.55e-08 | 199 |
endo-epithelium | 8.09e-08 | 82 |
excretory tube | 2.96e-07 | 16 |
kidney epithelium | 2.96e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.44e-11 | 14 |
female reproductive organ cancer | 2.20e-10 | 27 |
reproductive organ cancer | 2.58e-09 | 29 |