FFCP PHASE1:Hg19::chr7:45952690..45952701,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:45952690..45952701,-
|short_description=p21@IGFBP3
|description=CAGE_peak_21_at_IGFBP3_5end
|association_with_transcript=-14bp_to_S56205_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3486 | |EntrezGene=3486 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5472 | |HGNC=5472 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_S56205_5end | |||
|cluster_id=chr7:45952690..45952701,- | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_21_at_IGFBP3_5end | |||
|id=chr7:45952690..45952701,- | |||
|ontology_enrichment_celltype=CL:0002620!4.80e-11!23;CL:0000055!1.10e-09!180;CL:0000153!1.50e-09!9;CL:0000447!1.50e-09!9;CL:0000057!1.55e-08!75;CL:0000667!6.14e-08!6;CL:0000058!6.14e-08!6;CL:0000138!6.14e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000153;2.76e-29;9!CL:0000447;2.76e-29;9!CL:0000138;3.18e-23;6!CL:0002620;2.86e-17;23!CL:0000327;3.29e-17;15!CL:0000499;2.48e-14;28!CL:0002595;7.57e-10;5!CL:0002541;3.48e-08;3!CL:0000214;4.02e-08;3!CL:0000135;4.39e-08;3!CL:0000388;4.39e-08;3!CL:0000349;8.58e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.51e-29,9;CL:0000447,2.51e-29,9;CL:0000058,3.06e-23,6;CL:0000138,3.06e-23,6;CL:0000327,3.11e-17,15;CL:0002620,3.95e-17,23;CL:0000499,2.20e-14,28;CL:0002595,6.11e-10,5;CL:0002541,2.67e-08,3;CL:0000135,3.68e-08,3;CL:0000388,3.68e-08,3;CL:0000214,3.82e-08,3;CL:0000057,1.19e-07,76;CL:0000349,8.48e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!1.55e-08!5;DOID:450!1.55e-08!5;DOID:66!1.55e-08!5;DOID:423!1.55e-08!5;DOID:0080000!1.55e-08!5;DOID:11722!1.55e-08!5 | |||
|ontology_enrichment_disease_v019=DOID:17;6.01e-17;5!DOID:450;6.01e-17;5!DOID:66;6.01e-17;5!DOID:423;6.01e-17;5!DOID:0080000;6.01e-17;5!DOID:11722;6.01e-17;5!DOID:2513;5.27e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:17,9.74e-17,5;DOID:450,9.74e-17,5;DOID:66,9.74e-17,5;DOID:423,9.74e-17,5;DOID:0080000,9.74e-17,5;DOID:11722,9.74e-17,5;DOID:2513,5.13e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!7.07e-08!14;UBERON:0000158!7.07e-08!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0003834;7.57e-10;5!UBERON:0001533;7.57e-10;5!UBERON:0005631;9.31e-09;10!UBERON:0000158;9.31e-09;10!UBERON:0002097;2.41e-08;41!UBERON:0003124;3.48e-08;3!UBERON:0000920;3.48e-08;3!UBERON:0006915;4.02e-08;3!UBERON:0007616;4.02e-08;3!UBERON:0002217;4.02e-08;3!UBERON:0002018;4.02e-08;3!UBERON:0007846;4.39e-08;3!UBERON:0000043;4.39e-08;3!UBERON:0007845;4.39e-08;3!UBERON:0002199;3.35e-07;46!UBERON:0002416;3.35e-07;46!UBERON:0003513;3.66e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.64e-11,41;UBERON:0003834,6.11e-10,5;UBERON:0001533,6.11e-10,5;UBERON:0002199,9.34e-10,46;UBERON:0002416,9.34e-10,46;UBERON:0000920,2.67e-08,3;UBERON:0007846,3.68e-08,3;UBERON:0000043,3.68e-08,3;UBERON:0007845,3.68e-08,3;UBERON:0006915,3.82e-08,3;UBERON:0007616,3.82e-08,3;UBERON:0002217,3.82e-08,3;UBERON:0002018,3.82e-08,3;UBERON:0003513,3.15e-07,7 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.563817616383885,1.0007329835313,0,0.872338524100369,0,0,0,0.737201809504527,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,14.0961269429981,9.5254203020819,16.5125031615339,1.5905718941022,6.32625331393427,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0.612975591598039,0,0,2.51145489964407,1.06778694409284,1.27159140695737,1.20036438433761,0.309157587715317,2.06112432036503,0.744467425326359,0.168776332241266,0.68205903612839,3.02920529092937,1.38074847963449,0,4.26011511019937,2.01504196455281,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.239624855491583,1.14861935834114,0,0.723906533337896,0.821905290201534,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03985430765404,0.713715955188647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,0.744323423456331,0,1.68396056659844,0.128139149255701,0,0,0,0,0.710246901252508,0.0821271560138091,0,0.348631135379878,0,0,0,0.34444334449382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,2.20368642781448,0.6970372701606,0,0,0,0.74129687641568,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487426979262569,1.05650146756755,0,0,1.13008116620243,0,1.99031692572366,1.75380354101505,0,0,0.202910376962704,0,0,0,0,0,0,4.01104507065562,1.64647446479951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0.890894042497916,2.76444631889309,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,6.84287092855976,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91400695839152,0.0915975934018623,9.06159119231679,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520679215005393,0.0979923974143777,0,0,0.859930162358083,0,0,0,0,0,0,0,0,0,0,0,0,1.9980960958213,0,0,0,0,0,0,0.271808412147228,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0.896436696664224,0,0,0,0.5085370753095,0.542999601753713,0.864221491201268,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0.149254802886874,0.467426619694449,0,1.32582103692562,0,2.66943366478961,0.457680136793847,0.907385542579434,0.466311601748341,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0.358177682162975,0.308801447160972,0,0,0.192914038270915,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0.567515953566836,0,0,0.622077260032973,0,0,0,0,0,0.212574920101683,0.123935764259002,0,0.636008701306837,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0.577628330751691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0.638812138197976,0,0,0.606965604236632,0,0.887023701626388,0,0,0,0.0657727735628491,0,0,0,0,0,0,1.72742072974897,3.8220135030964,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.223710863595585,0,0.121917924982269,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,1.86919826156599,0.0939839179798536,0.0644578879735772,0,0.178553938605658,0,0.160482733378337,0,0,0,0,0,0,0.5290268405154,0,3.23522940041993,1.73050624849516,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0.217716747896961,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0.718601616852695,0,0.366724332548599,0,0.665756774185513,0,0 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|phase1_expression=0.181678379270557,0.428201047781966,0.563817616383885,1.0007329835313,0,0.872338524100369,0,0,0,0.737201809504527,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,14.0961269429981,9.5254203020819,16.5125031615339,1.5905718941022,6.32625331393427,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0.612975591598039,0,0,2.51145489964407,1.06778694409284,1.27159140695737,1.20036438433761,0.309157587715317,2.06112432036503,0.744467425326359,0.168776332241266,0.68205903612839,3.02920529092937,1.38074847963449,0,4.26011511019937,2.01504196455281,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.239624855491583,1.14861935834114,0,0.723906533337896,0.821905290201534,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03985430765404,0.713715955188647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,0.744323423456331,0,1.68396056659844,0.128139149255701,0,0,0,0,0.710246901252508,0.0821271560138091,0,0.348631135379878,0,0,0,0.34444334449382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,2.20368642781448,0.6970372701606,0,0,0,0.74129687641568,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487426979262569,1.05650146756755,0,0,1.13008116620243,0,1.99031692572366,1.75380354101505,0,0,0.202910376962704,0,0,0,0,0,0,4.01104507065562,1.64647446479951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0.890894042497916,2.76444631889309,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,6.84287092855976,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91400695839152,0.0915975934018623,9.06159119231679,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520679215005393,0.0979923974143777,0,0,0.859930162358083,0,0,0,0,0,0,0,0,0,0,0,0,1.9980960958213,0,0,0,0,0,0,0.271808412147228,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0.896436696664224,0,0,0,0.5085370753095,0.542999601753713,0.864221491201268,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0.149254802886874,0.467426619694449,0,1.32582103692562,0,2.66943366478961,0.457680136793847,0.907385542579434,0.466311601748341,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0.358177682162975,0.308801447160972,0,0,0.192914038270915,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0.567515953566836,0,0,0.622077260032973,0,0,0,0,0,0.212574920101683,0.123935764259002,0,0.636008701306837,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0.577628330751691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0.638812138197976,0,0,0.606965604236632,0,0.887023701626388,0,0,0,0.0657727735628491,0,0,0,0,0,0,1.72742072974897,3.8220135030964,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.223710863595585,0,0.121917924982269,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,1.86919826156599,0.0939839179798536,0.0644578879735772,0,0.178553938605658,0,0.160482733378337,0,0,0,0,0,0,0.5290268405154,0,3.23522940041993,1.73050624849516,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0.217716747896961,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0.718601616852695,0,0.366724332548599,0,0.665756774185513,0,0 | ||
|short_description=p21@IGFBP3 | |||
}} | }} |
Latest revision as of 19:25, 18 September 2015
Short description: | p21@IGFBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_21_at_IGFBP3_5end |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | -14bp_to_S56205_5end |
EntrezGene: | IGFBP3 |
HGNC: | 5472 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.51e-29 | 9 |
carbohydrate secreting cell | 2.51e-29 | 9 |
chondroblast | 3.06e-23 | 6 |
chondrocyte | 3.06e-23 | 6 |
extracellular matrix secreting cell | 3.11e-17 | 15 |
skin fibroblast | 3.95e-17 | 23 |
stromal cell | 2.20e-14 | 28 |
smooth muscle cell of the subclavian artery | 6.11e-10 | 5 |
chorionic membrane mesenchymal stem cell | 2.67e-08 | 3 |
fibrocyte | 3.68e-08 | 3 |
tendon cell | 3.68e-08 | 3 |
synovial cell | 3.82e-08 | 3 |
fibroblast | 1.19e-07 | 76 |
extraembryonic cell | 8.48e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.64e-11 | 41 |
thoracic segment blood vessel | 6.11e-10 | 5 |
subclavian artery | 6.11e-10 | 5 |
integument | 9.34e-10 | 46 |
integumental system | 9.34e-10 | 46 |
egg chorion | 2.67e-08 | 3 |
dense regular connective tissue | 3.68e-08 | 3 |
tendon | 3.68e-08 | 3 |
regular connective tissue | 3.68e-08 | 3 |
stratified squamous epithelium | 3.82e-08 | 3 |
layer of synovial tissue | 3.82e-08 | 3 |
synovial joint | 3.82e-08 | 3 |
synovial membrane of synovial joint | 3.82e-08 | 3 |
trunk blood vessel | 3.15e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.74e-17 | 5 |
myotonic disease | 9.74e-17 | 5 |
muscle tissue disease | 9.74e-17 | 5 |
myopathy | 9.74e-17 | 5 |
muscular disease | 9.74e-17 | 5 |
myotonic dystrophy | 9.74e-17 | 5 |
basal cell carcinoma | 5.13e-07 | 1 |