FFCP PHASE1:Hg19::chr7:45953044..45953078,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:45953044..45953078,- to FFCP PHASE1:Hg19::chr7:45953044..45953078,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3486 | |EntrezGene=3486 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5472 | |HGNC=5472 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-368bp_to_S56205_5end | |||
|cluster_id=chr7:45953044..45953078,- | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_2_at_IGFBP3_5end | |||
|id=chr7:45953044..45953078,- | |||
|ontology_enrichment_celltype=CL:0000055!3.83e-12!180;CL:0000057!5.83e-08!75;CL:0000499!7.99e-07!27;CL:0000359!8.28e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.47e-10;23!CL:0000349;2.27e-10;19!CL:0002334;1.04e-08;12!CL:0000153;5.89e-08;9!CL:0000447;5.89e-08;9!CL:0000134;8.33e-08;55!CL:0000499;5.41e-07;28!CL:0002537;8.78e-07;5!CL:0000138;9.81e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.52e-13,76;CL:0002620,1.54e-10,23;CL:0000349,2.44e-10,19;CL:0002334,1.13e-08,12;CL:0000136,1.98e-08,15;CL:0000153,5.86e-08,9;CL:0000447,5.86e-08,9;CL:0000048,1.28e-07,427;CL:0000723,3.74e-07,433;CL:0000499,4.86e-07,28;CL:0002537,8.98e-07,5;CL:0002595,9.54e-07,5;CL:0000058,9.79e-07,6;CL:0000138,9.79e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.09e-07;5!DOID:450;1.09e-07;5!DOID:66;1.09e-07;5!DOID:423;1.09e-07;5!DOID:0080000;1.09e-07;5!DOID:11722;1.09e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.12e-07,5;DOID:450,1.12e-07,5;DOID:66,1.12e-07,5;DOID:423,1.12e-07,5;DOID:0080000,1.12e-07,5;DOID:11722,1.12e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0005631!4.00e-09!14;UBERON:0000158!4.00e-09!14;UBERON:0000478!1.03e-08!24;UBERON:0002100!1.01e-07!216;UBERON:0001637!1.02e-07!42;UBERON:0003509!1.02e-07!42;UBERON:0004572!1.02e-07!42;UBERON:0005156!2.52e-07!59;UBERON:0000990!2.52e-07!59;UBERON:0002199!4.93e-07!45;UBERON:0002416!4.93e-07!45;UBERON:0004923!7.59e-07!57;UBERON:0004872!8.54e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;6.45e-10;24!UBERON:0004457;1.75e-09;9!UBERON:0000042;1.75e-09;9!UBERON:0003688;1.87e-08;6!UBERON:0002358;1.87e-08;6!UBERON:0003684;1.87e-08;6!UBERON:0001178;1.87e-08;6!UBERON:0002199;9.43e-08;46!UBERON:0002416;9.43e-08;46!UBERON:0005631;1.06e-07;10!UBERON:0000158;1.06e-07;10!UBERON:0002097;5.58e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.53e-11,14;UBERON:0000158,1.53e-11,14;UBERON:0002199,3.92e-11,46;UBERON:0002416,3.92e-11,46;UBERON:0000478,6.99e-10,24;UBERON:0003124,6.05e-09,7;UBERON:0002097,7.50e-09,41;UBERON:0003688,1.85e-08,6;UBERON:0002358,1.85e-08,6;UBERON:0003684,1.85e-08,6;UBERON:0001178,1.85e-08,6;UBERON:0004923,1.98e-07,66;UBERON:0003834,9.54e-07,5;UBERON:0001533,9.54e-07,5 | |||
|phase1_expression=20.893013616114,10.0627246228762,28.7546984355781,8.00586386825043,11.1740273606822,10.4680622892044,15.1979926900986,4.42203911398782,1.82829939739887,0.491467873003018,0,0.218441372130172,0.263766978228454,0.495065411840187,0,1.34465029290355,0.602694528023977,0.730310090387373,1.95173119516203,0.246242116153576,0.204000691244253,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,1.15076305659177,288.428443602884,211.063260377709,270.138757861936,38.9690114055039,37.9575198836056,0,0.443458794925128,0.527008714158756,0.327447688744282,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0.258416759169329,0,0.33472061276467,0,0,0,0,0.81014194788176,0,0,0,0,0,0.183201743930407,0,0,0,4.47274756525787,6.96467814155189,0.926864265692532,7.17091551872034,2.83734705758686,7.8494864019923,4.2699598291882,13.0733800661095,0.311211035399766,0,0,0.302714855289863,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0.877955241761676,2.14541457059314,2.85452311922534,0.226864366320042,20.0916391971525,18.1523780495782,30.7301256681365,26.7081075515118,22.5685039032181,13.912589162464,56.0211737558085,4.05063197379039,18.2207199651441,24.233642327435,52.4684422261106,4.0411514204703,47.5712853972263,44.2301711219341,4.91725717700414,0,0,0,0.121973706129595,0,0,0.207322110030741,0,0,3.12899064659632,2.57296375277154,1.38134921352481,0.928735856063958,0,0.118306800039844,0,0.241011029883482,0.110293972732394,0,0,0,0.196221465125346,0.769494313892781,0,0,0,0,0,0.982827216677626,9.45263850690247,0,0,0.171567810298526,0,0,0,0,0.325808305310325,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0.205654985406647,0,0,0.112131084345361,1.30788020649984,0,1.29271715757778,0,0,5.05282421511254,5.2003718455683,0,0,0,0,0,0,0.325736184293735,0,0.791951872933429,3.61727252471503,3.48613383440118,0.899756920638513,0,0,0,5.75099653179798,21.8237678084816,0,6.65994010670864,2.4657158706046,3.76028022803781,0,0,0,0,0.508189248444927,0,0.773288812777695,0,0,0,0,0,0.49076596687656,0.500170521059677,0,2.9115920614313,4.81758269752337,2.52323864054295,1.7571212248907,0.300946099727719,4.5481500811197,7.24311499047534,0,1.65932251687533,0.781952530212746,0.195801157462741,0,0,0,0,12.4282304292966,3.32870879020994,9.07170879989041,29.0286135147969,1.07423381301644,16.5589455715513,25.8841081496516,20.4682899626681,12.707459770345,1.48418066444991,0.154209693802656,14.2049380250502,2.87445046048332,0,2.09178681227927,0,2.00506470303285,0.0920809889358963,4.93702127107809,0.364182336013434,3.2781103739856,1.35359883872224,0.462092022626489,0.784349769176855,0,0.105551628892876,0,0,0,1.54227252690289,0.541892875087706,0,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0,0,0,4.73988653579522,0,0,0,0,19.2820715812991,3.28680442193215,0,0.15350367472613,0,0.107420244868274,0,0.0852266274161009,2.1367688555217,0.165284915360978,0,0,0.10115778085555,3.253918845081,39.9811680474913,0,0.616067160352178,0.532306030317022,1.73986598415015,10.9341289271313,10.1618669586814,0,0.316379424718726,0.190630193923825,0.255897791311334,0,0,2.35484592059769,0.179872457583315,0,0.117812402345686,0.606547444719948,0,0,1.46290121726877,7.55511817856982,7.39551027297288,0.818999468447914,0.424216295861138,5.65040583101214,1.65409603063837,61.6998246974334,32.8838163940322,0,0,1.21746226177622,0.92947049429925,0.563391205064483,0,0,1.78335525740625,0,57.4212768009646,19.7576935775941,0,0,0,0,0,3.29503302718727,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,4.68826173670061,0,0,0,11.6984797521468,24.648068509109,10.7506245734731,0,0,0.556543525114529,0,0,1.19548792950642,0,0,0,0,63.1410362953469,0.629078458031288,0.716084698702437,0,1.38100767891707,0,0,0,0,0,0,0,5.79999660347835,0,0.254253650292766,1.18193840883968,0,0,0,0,0,0,0,0,0.438770794307945,0.10893846351899,1.11538995422883,2.46240827212151,0.227884111694002,0,0,0,12.1220440698129,7.14461228534526,37.3124343213044,0,0,0,0,0,0,0,0,0,2.28525931422807,0,0,0,1.41532103205343,0,0,0.370691816839509,0.104421949505455,0,0,0,0,0,0,0,0,0,0.31593289814244,0.150323419414493,0,0,0,0,0,0,0.138674673013139,2.77695581336209,0.979923974143776,0.870592065804026,0.52418000472609,4.29965081179041,0,0,0.0821154570532092,0.581934098930517,0,0.451961481561065,0,0,0,0.782205530939212,0.240476460754601,0.426905989478705,23.3777243211092,0,0,0,0,0,0,0.135904206073614,0,0.815985741090574,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0.223171457441873,0.470284307407084,2.52209918479682,0,0,0,0,0.590564889088493,0,0,0.1362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| 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| ||
|short_description=p2@IGFBP3 | |||
}} | }} |
Latest revision as of 19:33, 18 September 2015
Short description: | p2@IGFBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_IGFBP3_5end |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | -368bp_to_S56205_5end |
EntrezGene: | IGFBP3 |
HGNC: | 5472 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.52e-13 | 76 |
skin fibroblast | 1.54e-10 | 23 |
extraembryonic cell | 2.44e-10 | 19 |
preadipocyte | 1.13e-08 | 12 |
fat cell | 1.98e-08 | 15 |
GAG secreting cell | 5.86e-08 | 9 |
carbohydrate secreting cell | 5.86e-08 | 9 |
multi fate stem cell | 1.28e-07 | 427 |
somatic stem cell | 3.74e-07 | 433 |
stromal cell | 4.86e-07 | 28 |
amnion mesenchymal stem cell | 8.98e-07 | 5 |
smooth muscle cell of the subclavian artery | 9.54e-07 | 5 |
chondroblast | 9.79e-07 | 6 |
chondrocyte | 9.79e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.53e-11 | 14 |
membranous layer | 1.53e-11 | 14 |
integument | 3.92e-11 | 46 |
integumental system | 3.92e-11 | 46 |
extraembryonic structure | 6.99e-10 | 24 |
chorion | 6.05e-09 | 7 |
skin of body | 7.50e-09 | 41 |
omentum | 1.85e-08 | 6 |
peritoneum | 1.85e-08 | 6 |
abdominal cavity | 1.85e-08 | 6 |
visceral peritoneum | 1.85e-08 | 6 |
organ component layer | 1.98e-07 | 66 |
thoracic segment blood vessel | 9.54e-07 | 5 |
subclavian artery | 9.54e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.12e-07 | 5 |
myotonic disease | 1.12e-07 | 5 |
muscle tissue disease | 1.12e-07 | 5 |
myopathy | 1.12e-07 | 5 |
muscular disease | 1.12e-07 | 5 |
myotonic dystrophy | 1.12e-07 | 5 |