FFCP PHASE1:Hg19::chr7:45954422..45954464,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3486 | |EntrezGene=3486 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5472 | |HGNC=5472 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=459bp_to_ENST00000460209_5end | |association_with_transcript=459bp_to_ENST00000460209_5end | ||
|cluster_id=chr7:45954422..45954464,- | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_4_at_IGFBP3_5end | |description=CAGE_peak_4_at_IGFBP3_5end | ||
|id=chr7:45954422..45954464,- | |id=chr7:45954422..45954464,- | ||
|ontology_enrichment_celltype=CL:0000055!7.41e-11!180;CL:0000057!2.49e-08!75;CL:0000359!1.73e-07!32;CL:0002620!5.87e-07!23 | |ontology_enrichment_celltype=CL:0000055!7.41e-11!180;CL:0000057!2.49e-08!75;CL:0000359!1.73e-07!32;CL:0002620!5.87e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.96e-12;23!CL:0000349;2.41e-11;19!CL:0000499;6.51e-09;28!CL:0000153;8.86e-09;9!CL:0000447;8.86e-09;9!CL:0000359;1.07e-07;32!CL:0000327;1.64e-07;15!CL:0000138;1.81e-07;6!CL:0002595;2.89e-07;5!CL:0002537;3.07e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,2.53e-12,23;CL:0000057,2.78e-11,76;CL:0000349,3.65e-11,19;CL:0000499,7.34e-09,28;CL:0000153,8.80e-09,9;CL:0000447,8.80e-09,9;CL:0000359,8.29e-08,32;CL:0000327,1.78e-07,15;CL:0000058,1.85e-07,6;CL:0000138,1.85e-07,6;CL:0000048,2.42e-07,427;CL:0002595,3.21e-07,5;CL:0002537,4.16e-07,5;CL:0000723,6.25e-07,433 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.07e-08;5!DOID:450;1.07e-08;5!DOID:66;1.07e-08;5!DOID:423;1.07e-08;5!DOID:0080000;1.07e-08;5!DOID:11722;1.07e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.07e-08,5;DOID:450,1.07e-08,5;DOID:66,1.07e-08,5;DOID:423,1.07e-08,5;DOID:0080000,1.07e-08,5;DOID:11722,1.07e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000478!1.88e-08!24;UBERON:0004573!8.00e-08!33;UBERON:0004571!8.00e-08!33;UBERON:0001637!1.67e-07!42;UBERON:0003509!1.67e-07!42;UBERON:0004572!1.67e-07!42;UBERON:0004872!2.44e-07!84;UBERON:0005631!3.81e-07!14;UBERON:0000158!3.81e-07!14 | |ontology_enrichment_uberon=UBERON:0000478!1.88e-08!24;UBERON:0004573!8.00e-08!33;UBERON:0004571!8.00e-08!33;UBERON:0001637!1.67e-07!42;UBERON:0003509!1.67e-07!42;UBERON:0004572!1.67e-07!42;UBERON:0004872!2.44e-07!84;UBERON:0005631!3.81e-07!14;UBERON:0000158!3.81e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;4.59e-11;24!UBERON:0004457;5.05e-10;9!UBERON:0000042;5.05e-10;9!UBERON:0003688;7.19e-09;6!UBERON:0002358;7.19e-09;6!UBERON:0003684;7.19e-09;6!UBERON:0001178;7.19e-09;6!UBERON:0005631;2.50e-08;10!UBERON:0000158;2.50e-08;10!UBERON:0002097;7.62e-08;41!UBERON:0002199;8.76e-08;46!UBERON:0002416;8.76e-08;46!UBERON:0003834;2.89e-07;5!UBERON:0001533;2.89e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.71e-12,14;UBERON:0000158,2.71e-12,14;UBERON:0000478,6.64e-11,24;UBERON:0002199,9.04e-11,46;UBERON:0002416,9.04e-11,46;UBERON:0002097,1.15e-09,41;UBERON:0003124,1.98e-09,7;UBERON:0003688,5.88e-09,6;UBERON:0002358,5.88e-09,6;UBERON:0003684,5.88e-09,6;UBERON:0001178,5.88e-09,6;UBERON:0004923,1.84e-07,66;UBERON:0004573,2.54e-07,33;UBERON:0004571,2.54e-07,33;UBERON:0003834,3.21e-07,5;UBERON:0001533,3.21e-07,5;UBERON:0004457,4.10e-07,12;UBERON:0000042,4.10e-07,12 | |||
|phase1_expression=4.72363786103447,3.42560838225573,3.94672331468719,19.0139266870948,5.81049422755474,12.2127393374052,0,1.26343974685366,1.56711376919903,2.94880723801811,0,0,0,0.247532705920093,0,0,1.20538905604795,2.19093027116212,0.975865597581014,0.246242116153576,0.204000691244253,0.313454721478088,0.286235987131057,0,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68511379871414,130.479534010828,149.900035280131,122.540155040857,10.3387173116643,61.3159936581321,0.0945348171640679,0,0.527008714158756,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,4.96971951695318,0.886413581652058,0.529636723252875,2.0078563452417,0.354668382198357,5.60677600142307,10.6748995729705,3.7000132262574,0,0.134710672069688,0,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.877955241761676,1.22595118319608,0.45071417671979,0.453728732640084,17.7595739331973,12.3863285514769,24.3721686333496,29.108836320187,9.37778016069794,14.9431513226465,18.611685633159,3.54430297706659,6.8205903612839,27.5152813926085,13.1631355058488,0.646584227275248,45.4412278421266,21.0571885295768,4.91725717700414,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,3.12899064659632,3.21620469096443,0,0.928735856063958,0.721879481669586,0.236613600079688,0.168584690078102,0,0.110293972732394,0.653638332277218,0.237270619111097,0.269662616320329,0,0,0,0,0,0,0,0,1.77236972004421,0,0,1.20097467208968,0,0,0,0,0,0,1.44331342025273,0,0.821860859650752,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,3.05172048183296,0,0.904902010304444,0,0.845302752556,1.06375246633948,2.08014873822732,0,1.41849132023278,0,0,2.17048642156577,0,0.977208552881205,0,0,0,0,0.399891964728228,0,0,0,2.63587341040741,3.44585807502342,0,7.6734092533817,3.08214483825575,3.22309733831812,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0.736148950314839,0,0,2.28767947683888,5.70972764150918,2.52323864054295,2.22568688486155,0.300946099727719,0,7.24311499047534,0.664225598535437,0.737476674166813,0,0.195801157462741,0,0,0,0,1.21251028578504,6.65741758041988,4.23346410661552,7.44323423456331,2.14846762603287,5.05188169979532,3.71603532841533,10.7458522304008,4.18220194973379,7.42090332224955,0,2.30830242907065,0.328508624055237,0,0.813472649219715,0,0.40101294060657,0.0920809889358963,1.26295892981067,0,1.04899531967539,0,0.15403067420883,0.784349769176855,2.92278449306521,0,0,0,0.431831832204279,0,0,0,0.509752546090077,2.49322802678617,0.895499018888713,0,0,0,0.656029291399411,0,0.412164046590889,0,0,0,0,0,0.676695028044854,0,0,0,0.214840489736547,0,0,0.890320356467374,0,0,0,0,2.78907329578371,16.0554296883626,0.6970372701606,0.616067160352178,1.06461206063404,0,3.7064843820784,9.15999275148744,0,0,0,0,0,0.95460974377781,3.13979456079692,0.179872457583315,0.823611089208164,0,0.404364963146632,3.17020642346017,1.26377536871694,2.43816869544795,2.43713489631284,3.16950440270266,0.272999822815972,0,3.39024349860728,2.2054613741845,15.9225354057893,16.2226827543892,0,0,2.02910376962704,0.30982349809975,0,0,0,0.35667105148125,0,16.6775031885155,6.91519275215794,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,1.02555725490326,0,0,0,12.8922021758353,8.31501106331388,12.9007494881677,0,0.281338832821026,0,0,0,1.59398390600856,0,0,0,0,50.3884132012128,0.179736702294654,0.358042349351218,0,0.789147245095469,0,1.11136990144637,0,0.0927680981618513,0,0,0,1.44999915086959,0.227586896570999,0.508507300585533,2.36387681767936,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0.846452843541768,0.227884111694002,0,0,0,23.2870846604301,1.00757352742049,35.1802952172299,0,0,0,0,0,0,0,0,0,2.12202650606892,0,0,0,0.176915129006678,0.611030144933625,0.593042257361244,0.247127877893006,0.104421949505455,0,0,0,0,0,0,0.394584402849391,0,0,0.31593289814244,0,0,0.664653872707185,0.330991955875499,0,0,0.284609546029793,0.693373365065693,3.81831424337288,0.587954384486266,0.522355239482415,0.17472666824203,4.47163684426203,0.0967563312890851,0,0.164230914106418,0,0,0.90392296312213,0,0,0,1.17330829640882,0.160317640503067,0,11.1893381365993,0,0,0.171594997861965,0,0,0.471388069233591,0,0.209205692624666,1.22397861163586,0,0,0.136905378891993,0,0.429765441419957,0,0.279282401272254,0,0,0.199679000498991,0.429226048136571,0.223171457441873,0.403100834920358,12.2501960404417,0,0,0,0,0.492137407573744,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,2.0126081255956,0.157611414598396,0.157363764404994,0,2.68931008999267,0,0,0.662091970365432,4.068296602476,10.8599920350743,2.5926644736038,1.95952416065645,0,0,0,0.226624183040251,0.58620893471233,2.65013777824443,0.129282956361551,0,0.1710868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| ||
|short_description=p4@IGFBP3 | |short_description=p4@IGFBP3 | ||
}} | }} |
Latest revision as of 19:43, 18 September 2015
Short description: | p4@IGFBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_IGFBP3_5end |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | 459bp_to_ENST00000460209_5end |
EntrezGene: | IGFBP3 |
HGNC: | 5472 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 2.53e-12 | 23 |
fibroblast | 2.78e-11 | 76 |
extraembryonic cell | 3.65e-11 | 19 |
stromal cell | 7.34e-09 | 28 |
GAG secreting cell | 8.80e-09 | 9 |
carbohydrate secreting cell | 8.80e-09 | 9 |
vascular associated smooth muscle cell | 8.29e-08 | 32 |
extracellular matrix secreting cell | 1.78e-07 | 15 |
chondroblast | 1.85e-07 | 6 |
chondrocyte | 1.85e-07 | 6 |
multi fate stem cell | 2.42e-07 | 427 |
smooth muscle cell of the subclavian artery | 3.21e-07 | 5 |
amnion mesenchymal stem cell | 4.16e-07 | 5 |
somatic stem cell | 6.25e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.71e-12 | 14 |
membranous layer | 2.71e-12 | 14 |
extraembryonic structure | 6.64e-11 | 24 |
integument | 9.04e-11 | 46 |
integumental system | 9.04e-11 | 46 |
skin of body | 1.15e-09 | 41 |
chorion | 1.98e-09 | 7 |
omentum | 5.88e-09 | 6 |
peritoneum | 5.88e-09 | 6 |
abdominal cavity | 5.88e-09 | 6 |
visceral peritoneum | 5.88e-09 | 6 |
organ component layer | 1.84e-07 | 66 |
systemic artery | 2.54e-07 | 33 |
systemic arterial system | 2.54e-07 | 33 |
thoracic segment blood vessel | 3.21e-07 | 5 |
subclavian artery | 3.21e-07 | 5 |
cavity lining | 4.10e-07 | 12 |
serous membrane | 4.10e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.07e-08 | 5 |
myotonic disease | 1.07e-08 | 5 |
muscle tissue disease | 1.07e-08 | 5 |
myopathy | 1.07e-08 | 5 |
muscular disease | 1.07e-08 | 5 |
myotonic dystrophy | 1.07e-08 | 5 |