FFCP PHASE1:Hg19::chr18:19749517..19749531,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2627 | |EntrezGene=2627 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4174 | |HGNC=4174 | ||
|TSSclassifier=strong | |||
|UniProt=Q05CA6,Q92908 | |UniProt=Q05CA6,Q92908 | ||
|association_with_transcript=101bp_to_NM_005257,uc002ktt.1_5end | |association_with_transcript=101bp_to_NM_005257,uc002ktt.1_5end | ||
|cluster_id=chr18:19749517..19749531,+ | |||
|coexpression_cluster_id=C3708 | |coexpression_cluster_id=C3708 | ||
|description=CAGE_peak_3_at_GATA6_5end | |description=CAGE_peak_3_at_GATA6_5end | ||
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|ontology_enrichment_celltype=CL:0000066!5.88e-09!254;CL:0000220!2.89e-08!246;CL:0000222!4.51e-08!119;CL:0002321!5.83e-08!248;CL:0000192!1.74e-07!42;CL:0000514!1.74e-07!42;CL:0002494!2.77e-07!16;CL:0000359!7.40e-07!32 | |ontology_enrichment_celltype=CL:0000066!5.88e-09!254;CL:0000220!2.89e-08!246;CL:0000222!4.51e-08!119;CL:0002321!5.83e-08!248;CL:0000192!1.74e-07!42;CL:0000514!1.74e-07!42;CL:0002494!2.77e-07!16;CL:0000359!7.40e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002494;4.91e-08;16 | |ontology_enrichment_celltype_v019=CL:0002494;4.91e-08;16 | ||
|ontology_enrichment_celltype_v019_2=CL:0002494,5.33e-08,16;CL:0000222,1.52e-07,121;CL:0000192,1.92e-07,43;CL:0000514,1.92e-07,43;CL:0000066,4.52e-07,253;CL:0000359,5.78e-07,32 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:0050687!2.73e-09!143;DOID:305!1.34e-08!106 | |ontology_enrichment_disease=DOID:0050687!2.73e-09!143;DOID:305!1.34e-08!106 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:0050687,7.07e-09,143;DOID:305,6.56e-08,106 | |||
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|ontology_enrichment_uberon_v019=UBERON:0007100;7.26e-14;25!UBERON:0000948;9.58e-12;22!UBERON:0002423;8.93e-09;25!UBERON:0001637;4.92e-08;42!UBERON:0003509;4.92e-08;42!UBERON:0004572;4.92e-08;42!UBERON:0005409;7.28e-08;22!UBERON:0002107;2.02e-07;19!UBERON:0006925;2.02e-07;19 | |ontology_enrichment_uberon_v019=UBERON:0007100;7.26e-14;25!UBERON:0000948;9.58e-12;22!UBERON:0002423;8.93e-09;25!UBERON:0001637;4.92e-08;42!UBERON:0003509;4.92e-08;42!UBERON:0004572;4.92e-08;42!UBERON:0005409;7.28e-08;22!UBERON:0002107;2.02e-07;19!UBERON:0006925;2.02e-07;19 | ||
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| ||
|short_description=p3@GATA6 | |short_description=p3@GATA6 | ||
}} | }} |
Latest revision as of 22:43, 18 September 2015
Short description: | p3@GATA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GATA6_5end |
Coexpression cluster: | C3708_stomach_colon_hepatoblastoma_ovary_heart_Hepatic_mesothelioma |
Association with transcript: | 101bp_to_NM_005257, uc002ktt.1_5end |
EntrezGene: | GATA6 |
HGNC: | 4174 |
UniProt: | Q05CA6Q92908 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiocyte | 5.33e-08 | 16 |
mesodermal cell | 1.52e-07 | 121 |
smooth muscle cell | 1.92e-07 | 43 |
smooth muscle myoblast | 1.92e-07 | 43 |
epithelial cell | 4.52e-07 | 253 |
vascular associated smooth muscle cell | 5.78e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 7.07e-09 | 143 |
carcinoma | 6.56e-08 | 106 |