FFCP PHASE1:Hg19::chr18:19750951..19750980,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2627 | |EntrezGene=2627 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4174 | |HGNC=4174 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=57bp_to_uc002ktu.1_5end | |association_with_transcript=57bp_to_uc002ktu.1_5end | ||
|cluster_id=chr18:19750951..19750980,+ | |||
|description=CAGE_peak_10_at_GATA6_5end | |description=CAGE_peak_10_at_GATA6_5end | ||
|id=chr18:19750951..19750980,+ | |id=chr18:19750951..19750980,+ | ||
|ontology_enrichment_celltype=CL:0000359!8.53e-12!32;CL:0000192!3.67e-11!42;CL:0000514!3.67e-11!42;CL:0000187!3.67e-10!54;CL:0000680!2.82e-09!57;CL:0000056!2.82e-09!57;CL:0000355!2.82e-09!57;CL:0000183!9.69e-09!59;CL:0000393!1.74e-08!60;CL:0000211!1.74e-08!60;CL:0000222!4.74e-07!119;CL:0000055!5.21e-07!180;CL:1000306!9.68e-07!4;CL:0002547!9.68e-07!4 | |ontology_enrichment_celltype=CL:0000359!8.53e-12!32;CL:0000192!3.67e-11!42;CL:0000514!3.67e-11!42;CL:0000187!3.67e-10!54;CL:0000680!2.82e-09!57;CL:0000056!2.82e-09!57;CL:0000355!2.82e-09!57;CL:0000183!9.69e-09!59;CL:0000393!1.74e-08!60;CL:0000211!1.74e-08!60;CL:0000222!4.74e-07!119;CL:0000055!5.21e-07!180;CL:1000306!9.68e-07!4;CL:0002547!9.68e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002592;2.00e-12;3!CL:0000039;3.71e-12;7!CL:0000586;3.71e-12;7!CL:0000511;6.05e-10;1!CL:0002625;6.05e-10;1!CL:0002568;6.05e-10;1!CL:0000216;6.05e-10;1!CL:1000306;9.01e-10;4!CL:0002547;9.01e-10;4!CL:0002594;1.52e-09;4!CL:0000359;8.66e-09;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002592,2.52e-12,3;CL:0000039,3.72e-12,7;CL:0000586,3.72e-12,7;CL:0002568,3.71e-10,1;CL:0000511,4.06e-10,1;CL:0002625,4.06e-10,1;CL:0000216,4.06e-10,1;CL:1000306,9.85e-10,4;CL:0002547,9.85e-10,4;CL:0002594,1.52e-09,4;CL:0000359,3.59e-09,32 | |||
|ontology_enrichment_development_v019=UBERON:0004140;2.06e-10;1!UBERON:0006242;6.05e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!2.01e-17!84;UBERON:0001009!1.79e-12!113;UBERON:0001981!5.73e-12!60;UBERON:0007500!5.73e-12!60;UBERON:0004537!5.73e-12!60;UBERON:0006965!5.73e-12!60;UBERON:0003914!1.02e-11!118;UBERON:0007100!1.48e-11!27;UBERON:0001637!2.39e-11!42;UBERON:0003509!2.39e-11!42;UBERON:0004572!2.39e-11!42;UBERON:0004573!3.54e-11!33;UBERON:0004571!3.54e-11!33;UBERON:0004535!1.34e-10!110;UBERON:0002049!2.78e-10!79;UBERON:0007798!2.78e-10!79;UBERON:0000055!2.12e-09!69;UBERON:0000948!1.19e-08!24;UBERON:0005498!1.19e-08!24;UBERON:0004140!1.19e-08!24;UBERON:0009881!1.19e-08!24;UBERON:0004141!1.19e-08!24;UBERON:0003084!1.19e-08!24;UBERON:0007005!1.19e-08!24;UBERON:0004139!1.19e-08!24;UBERON:0004291!1.19e-08!24;UBERON:0002385!1.39e-08!63;UBERON:0001015!1.39e-08!63;UBERON:0000383!1.39e-08!63;UBERON:0001134!3.04e-08!61;UBERON:0002036!3.04e-08!61;UBERON:0003082!3.04e-08!61;UBERON:0000486!5.14e-07!82;UBERON:0004458!5.61e-07!49;UBERON:0000415!9.68e-07!4;UBERON:0007240!9.68e-07!4;UBERON:0005742!9.68e-07!4;UBERON:0005734!9.68e-07!4;UBERON:0004664!9.68e-07!4;UBERON:0004663!9.68e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0003498;2.00e-12;3!UBERON:0005985;2.00e-12;3!UBERON:0001621;2.00e-12;3!UBERON:0001637;5.37e-10;42!UBERON:0003509;5.37e-10;42!UBERON:0004572;5.37e-10;42!UBERON:0001136;6.05e-10;1!UBERON:0001343;6.05e-10;1!UBERON:0004910;6.05e-10;1!UBERON:0004813;6.05e-10;1!UBERON:0004797;9.01e-10;4!UBERON:0000415;9.01e-10;4!UBERON:0007240;9.01e-10;4!UBERON:0005742;9.01e-10;4!UBERON:0005734;9.01e-10;4!UBERON:0004664;9.01e-10;4!UBERON:0004663;9.01e-10;4!UBERON:0001310;1.52e-09;4!UBERON:0004573;2.57e-07;33!UBERON:0004571;2.57e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001621,2.52e-12,3;UBERON:0001637,4.54e-12,42;UBERON:0003509,4.54e-12,42;UBERON:0004572,4.54e-12,42;UBERON:0001136,4.06e-10,1;UBERON:0001343,4.06e-10,1;UBERON:0004910,4.06e-10,1;UBERON:0005154,4.06e-10,1;UBERON:0005295,4.06e-10,1;UBERON:0004813,4.06e-10,1;UBERON:0005297,4.06e-10,1;UBERON:0005294,4.06e-10,1;UBERON:0010141,4.06e-10,1;UBERON:0005891,4.06e-10,1;UBERON:0000415,9.85e-10,4;UBERON:0007240,9.85e-10,4;UBERON:0005742,9.85e-10,4;UBERON:0005734,9.85e-10,4;UBERON:0004664,9.85e-10,4;UBERON:0004663,9.85e-10,4;UBERON:0001310,1.52e-09,4;UBERON:0004573,6.07e-09,33;UBERON:0004571,6.07e-09,33;UBERON:0004872,7.08e-09,83;UBERON:0007500,2.66e-08,59;UBERON:0001981,2.66e-08,59;UBERON:0004537,2.66e-08,59;UBERON:0006965,2.66e-08,59;UBERON:0003498,9.55e-08,5;UBERON:0005985,9.55e-08,5;UBERON:0000055,4.56e-07,68 | |||
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| ||
|short_description=p10@GATA6 | |short_description=p10@GATA6 | ||
}} | }} |
Latest revision as of 22:47, 18 September 2015
Short description: | p10@GATA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_GATA6_5end |
Coexpression cluster: | NA |
Association with transcript: | 57bp_to_uc002ktu.1_5end |
EntrezGene: | GATA6 |
HGNC: | 4174 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the coronary artery | 2.52e-12 | 3 |
germ line cell | 3.72e-12 | 7 |
germ cell | 3.72e-12 | 7 |
mesenchymal stem cell of Wharton's jelly | 3.71e-10 | 1 |
androgen binding protein secreting cell | 4.06e-10 | 1 |
seminiferous tubule epithelial cell | 4.06e-10 | 1 |
Sertoli cell | 4.06e-10 | 1 |
fibroblast of tunica adventitia of artery | 9.85e-10 | 4 |
fibroblast of the aortic adventitia | 9.85e-10 | 4 |
smooth muscle cell of the umbilical artery | 1.52e-09 | 4 |
vascular associated smooth muscle cell | 3.59e-09 | 32 |
Ontology term | p-value | n |
---|---|---|
coronary artery | 2.52e-12 | 3 |
artery | 4.54e-12 | 42 |
arterial blood vessel | 4.54e-12 | 42 |
arterial system | 4.54e-12 | 42 |
mesothelium | 4.06e-10 | 1 |
seminiferous tubule of testis | 4.06e-10 | 1 |
epithelium of male gonad | 4.06e-10 | 1 |
epithelial cord | 4.06e-10 | 1 |
sex cord | 4.06e-10 | 1 |
seminiferous tubule epithelium | 4.06e-10 | 1 |
testis sex cord | 4.06e-10 | 1 |
genital ridge | 4.06e-10 | 1 |
primitive sex cord of indifferent gonad | 4.06e-10 | 1 |
coelomic epithelium | 4.06e-10 | 1 |
artery wall | 9.85e-10 | 4 |
tunica adventitia of artery | 9.85e-10 | 4 |
adventitia | 9.85e-10 | 4 |
tunica adventitia of blood vessel | 9.85e-10 | 4 |
aorta tunica adventitia | 9.85e-10 | 4 |
aorta wall | 9.85e-10 | 4 |
umbilical artery | 1.52e-09 | 4 |
systemic artery | 6.07e-09 | 33 |
systemic arterial system | 6.07e-09 | 33 |
splanchnic layer of lateral plate mesoderm | 7.08e-09 | 83 |
epithelial tube open at both ends | 2.66e-08 | 59 |
blood vessel | 2.66e-08 | 59 |
blood vasculature | 2.66e-08 | 59 |
vascular cord | 2.66e-08 | 59 |
heart blood vessel | 9.55e-08 | 5 |
coronary vessel | 9.55e-08 | 5 |
vessel | 4.56e-07 | 68 |