FFCP PHASE1:Hg19::chr12:52885340..52885349,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3853 | |EntrezGene=3853 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6443 | |HGNC=6443 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=59bp_to_ENST00000549754_5end | |association_with_transcript=59bp_to_ENST00000549754_5end | ||
|cluster_id=chr12:52885340..52885349,- | |||
|coexpression_cluster_id=C594 | |||
|description=CAGE_peak_10_at_KRT6A_5end | |description=CAGE_peak_10_at_KRT6A_5end | ||
|id=chr12:52885340..52885349,- | |id=chr12:52885340..52885349,- | ||
|ontology_enrichment_celltype=CL:0002076!6.08e-26!43;CL:0002368!1.01e-21!13;CL:0002159!1.78e-21!13;CL:0000223!1.35e-17!59;CL:0000066!2.24e-13!254;CL:0002328!1.55e-12!3;CL:0002077!3.94e-11!33;CL:0002621!4.44e-11!3;CL:0002166!4.77e-11!3;CL:0002202!1.42e-10!9;CL:0002632!1.42e-10!9;CL:0000240!5.70e-10!6;CL:0000311!5.70e-10!6;CL:0000079!5.70e-10!6;CL:0000237!5.70e-10!6;CL:0000036!5.70e-10!6;CL:0000357!5.70e-10!6;CL:0000114!5.70e-10!6;CL:0002251!1.52e-09!21;CL:0000575!9.57e-09!2;CL:0000362!9.59e-08!8;CL:0002536!1.01e-07!2;CL:0000622!2.37e-07!5;CL:0000312!2.93e-07!5 | |ontology_enrichment_celltype=CL:0002076!6.08e-26!43;CL:0002368!1.01e-21!13;CL:0002159!1.78e-21!13;CL:0000223!1.35e-17!59;CL:0000066!2.24e-13!254;CL:0002328!1.55e-12!3;CL:0002077!3.94e-11!33;CL:0002621!4.44e-11!3;CL:0002166!4.77e-11!3;CL:0002202!1.42e-10!9;CL:0002632!1.42e-10!9;CL:0000240!5.70e-10!6;CL:0000311!5.70e-10!6;CL:0000079!5.70e-10!6;CL:0000237!5.70e-10!6;CL:0000036!5.70e-10!6;CL:0000357!5.70e-10!6;CL:0000114!5.70e-10!6;CL:0002251!1.52e-09!21;CL:0000575!9.57e-09!2;CL:0000362!9.59e-08!8;CL:0002536!1.01e-07!2;CL:0000622!2.37e-07!5;CL:0000312!2.93e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002159;3.43e-21;14!CL:0002328;3.81e-20;3!CL:0002202;1.06e-17;9!CL:0002632;1.06e-17;9!CL:0002368;3.87e-17;13!CL:0002076;8.39e-14;42!CL:0000575;1.01e-13;2!CL:0000622;6.29e-12;5!CL:0000312;9.47e-12;5!CL:0000362;1.94e-11;9!CL:0000154;5.05e-10;6!CL:0000240;7.10e-10;6!CL:0000311;7.10e-10;6!CL:0000079;7.10e-10;6!CL:0000237;7.10e-10;6!CL:0002231;2.28e-09;3!CL:0000307;2.28e-09;3!CL:0002577;2.75e-09;3!CL:0002077;2.92e-09;34!CL:0002623;4.17e-09;3!CL:0000349;3.33e-08;19!CL:0002252;7.50e-08;1!CL:0000150;7.88e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,3.83e-21,14;CL:0002328,2.28e-20,3;CL:0002076,2.51e-19,42;CL:0002202,9.43e-18,9;CL:0002632,9.43e-18,9;CL:0002368,2.79e-17,13;CL:0000575,7.14e-14,2;CL:0000223,2.30e-13,58;CL:0000622,6.79e-12,5;CL:0000312,9.85e-12,5;CL:0000362,2.05e-11,9;CL:0002077,1.28e-10,34;CL:0000154,5.38e-10,6;CL:0000240,7.33e-10,6;CL:0000311,7.33e-10,6;CL:0000079,7.33e-10,6;CL:0000237,7.33e-10,6;CL:0000036,7.33e-10,6;CL:0000357,7.33e-10,6;CL:0000114,7.33e-10,6;CL:0000066,1.35e-09,253;CL:0002231,1.66e-09,3;CL:0002577,2.43e-09,3;CL:0000068,2.75e-09,3;CL:0000069,2.75e-09,3;CL:0000307,2.75e-09,3;CL:0000377,2.75e-09,3;CL:0002623,4.35e-09,3;CL:0000349,3.33e-08,19;CL:0002252,7.76e-08,1;CL:0000150,8.21e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;7.10e-10;6!CL:0000114;7.10e-10;6!CL:0000377;2.28e-09;3!CL:0000223;6.50e-09;58!UBERON:0009143;1.91e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;1.91e-07;1!DOID:3149;1.91e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,3.17e-07,1;DOID:3149,3.17e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.18e-19!14;UBERON:0000158!2.18e-19!14;UBERON:0001004!1.51e-16!72;UBERON:0003124!8.32e-13!7;UBERON:0004119!1.20e-12!169;UBERON:0000925!1.20e-12!169;UBERON:0006595!1.20e-12!169;UBERON:0004815!1.55e-12!3;UBERON:0002031!1.55e-12!3;UBERON:0000166!4.85e-12!21;UBERON:0007196!5.15e-12!14;UBERON:0001558!5.15e-12!14;UBERON:0000065!1.00e-11!53;UBERON:0001949!4.44e-11!3;UBERON:0000165!1.18e-10!28;UBERON:0000930!1.18e-10!28;UBERON:0000478!1.34e-10!24;UBERON:0000161!4.01e-10!35;UBERON:0002185!1.70e-09!4;UBERON:0003102!3.83e-09!95;UBERON:0001987!1.08e-08!4;UBERON:0004340!1.08e-08!4;UBERON:0000305!1.76e-08!7;UBERON:0001708!2.14e-08!4;UBERON:0001704!2.14e-08!4;UBERON:0003126!3.30e-08!7;UBERON:0001005!3.30e-08!7;UBERON:0001444!3.78e-08!48;UBERON:0003127!1.70e-07!2;UBERON:0004871!2.02e-07!8;UBERON:0000064!2.65e-07!219;UBERON:0000072!3.07e-07!46;UBERON:0005178!3.42e-07!34;UBERON:0002224!3.42e-07!34;UBERON:0005181!6.10e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;3.81e-20;3!UBERON:0002031;3.81e-20;3!UBERON:0002185;2.64e-12;5!UBERON:0007196;1.54e-10;15!UBERON:0001558;1.54e-10;15!UBERON:0001723;1.73e-09;3!UBERON:0001033;1.73e-09;3!UBERON:0001043;2.28e-09;3!UBERON:0000485;6.36e-09;7!UBERON:0005178;2.09e-08;34!UBERON:0002224;2.09e-08;34!UBERON:0005181;6.60e-08;35!UBERON:0005795;1.91e-07;1!UBERON:0000964;2.76e-07;4!UBERON:0010409;2.76e-07;4!UBERON:0001041;2.87e-07;14!UBERON:0001987;3.60e-07;4!UBERON:0001003;6.66e-07;15!UBERON:0007376;6.66e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.28e-20,3;UBERON:0002031,2.28e-20,3;UBERON:0002185,1.95e-12,5;UBERON:0005631,3.23e-11,14;UBERON:0000158,3.23e-11,14;UBERON:0003102,4.47e-11,99;UBERON:0007196,1.44e-10,15;UBERON:0001558,1.44e-10,15;UBERON:0001723,2.23e-09,3;UBERON:0001033,2.23e-09,3;UBERON:0010056,2.23e-09,3;UBERON:0001043,2.33e-09,3;UBERON:0009143,2.33e-09,3;UBERON:0004119,5.53e-09,160;UBERON:0000925,5.53e-09,160;UBERON:0006595,5.53e-09,160;UBERON:0003124,1.14e-08,7;UBERON:0005178,2.29e-08,34;UBERON:0002224,2.29e-08,34;UBERON:0001004,2.93e-08,74;UBERON:0005181,4.21e-08,35;UBERON:0005157,1.18e-07,47;UBERON:0000161,1.23e-07,36;UBERON:0000964,2.32e-07,4;UBERON:0010409,2.32e-07,4;UBERON:0004348,2.32e-07,4;UBERON:0005427,2.32e-07,4;UBERON:0001987,3.28e-07,4;UBERON:0004340,3.28e-07,4;UBERON:0000485,4.19e-07,9;UBERON:0001003,6.88e-07,15;UBERON:0007376,6.88e-07,15;UBERON:0007383,6.88e-07,15;UBERON:0000166,8.03e-07,22;UBERON:0001041,9.04e-07,87 | |||
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| ||
|short_description=p10@KRT6A | |short_description=p10@KRT6A | ||
}} | }} |
Latest revision as of 22:50, 18 September 2015
Short description: | p10@KRT6A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_KRT6A_5end |
Coexpression cluster: | C594_Keratinocyte_Placental_amniotic_Esophageal_tongue_Corneal_Prostate |
Association with transcript: | 59bp_to_ENST00000549754_5end |
EntrezGene: | KRT6A |
HGNC: | 6443 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 2.28e-20 | 3 |
epithelium of bronchus | 2.28e-20 | 3 |
bronchus | 1.95e-12 | 5 |
extraembryonic membrane | 3.23e-11 | 14 |
membranous layer | 3.23e-11 | 14 |
surface structure | 4.47e-11 | 99 |
tracheobronchial tree | 1.44e-10 | 15 |
lower respiratory tract | 1.44e-10 | 15 |
tongue | 2.23e-09 | 3 |
gustatory system | 2.23e-09 | 3 |
future tongue | 2.23e-09 | 3 |
esophagus | 2.33e-09 | 3 |
esophageal region | 2.33e-09 | 3 |
endoderm-derived structure | 5.53e-09 | 160 |
endoderm | 5.53e-09 | 160 |
presumptive endoderm | 5.53e-09 | 160 |
chorion | 1.14e-08 | 7 |
thoracic cavity element | 2.29e-08 | 34 |
thoracic cavity | 2.29e-08 | 34 |
respiratory system | 2.93e-08 | 74 |
thoracic segment organ | 4.21e-08 | 35 |
epithelial fold | 1.18e-07 | 47 |
orifice | 1.23e-07 | 36 |
cornea | 2.32e-07 | 4 |
eye surface | 2.32e-07 | 4 |
optic eminence | 2.32e-07 | 4 |
corneal primordium | 2.32e-07 | 4 |
placenta | 3.28e-07 | 4 |
allantois | 3.28e-07 | 4 |
simple columnar epithelium | 4.19e-07 | 9 |
skin epidermis | 6.88e-07 | 15 |
outer epithelium | 6.88e-07 | 15 |
enveloping layer of ectoderm | 6.88e-07 | 15 |
oral opening | 8.03e-07 | 22 |
foregut | 9.04e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 3.17e-07 | 1 |
keratoacanthoma | 3.17e-07 | 1 |