FFCP PHASE1:Hg19::chr4:8230872..8230885,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54436 | |EntrezGene=54436 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26009 | |HGNC=26009 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000502350,uc003gky.2_5end | |association_with_transcript=0bp_to_ENST00000502350,uc003gky.2_5end | ||
|cluster_id=chr4:8230872..8230885,+ | |||
|coexpression_cluster_id=C28 | |coexpression_cluster_id=C28 | ||
|description=CAGE_peak_6_at_SH3TC1_5end | |description=CAGE_peak_6_at_SH3TC1_5end | ||
|id=chr4:8230872..8230885,+ | |id=chr4:8230872..8230885,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.85e-38!53;CL:0000051!1.85e-38!53;CL:0000838!3.39e-35!52;CL:0000945!1.62e-26!24;CL:0000826!1.62e-26!24;CL:0002087!1.49e-14!119;CL:0000084!2.36e-13!25;CL:0000827!2.36e-13!25;CL:0000738!3.27e-13!140;CL:0002031!3.13e-12!124;CL:0000785!5.81e-12!2;CL:0000955!5.81e-12!2;CL:0000818!5.81e-12!2;CL:0000954!5.81e-12!2;CL:0000816!5.81e-12!2;CL:0000037!6.12e-10!172;CL:0000566!6.12e-10!172;CL:0002032!2.45e-09!165;CL:0000837!2.45e-09!165;CL:0000988!3.73e-09!182;CL:0000817!2.91e-08!3;CL:0000791!1.27e-07!18;CL:0000789!1.27e-07!18;CL:0002420!1.27e-07!18;CL:0002419!1.27e-07!18;CL:0000790!1.27e-07!18;CL:0000819!4.78e-07!1 | |ontology_enrichment_celltype=CL:0000542!1.85e-38!53;CL:0000051!1.85e-38!53;CL:0000838!3.39e-35!52;CL:0000945!1.62e-26!24;CL:0000826!1.62e-26!24;CL:0002087!1.49e-14!119;CL:0000084!2.36e-13!25;CL:0000827!2.36e-13!25;CL:0000738!3.27e-13!140;CL:0002031!3.13e-12!124;CL:0000785!5.81e-12!2;CL:0000955!5.81e-12!2;CL:0000818!5.81e-12!2;CL:0000954!5.81e-12!2;CL:0000816!5.81e-12!2;CL:0000037!6.12e-10!172;CL:0000566!6.12e-10!172;CL:0002032!2.45e-09!165;CL:0000837!2.45e-09!165;CL:0000988!3.73e-09!182;CL:0000817!2.91e-08!3;CL:0000791!1.27e-07!18;CL:0000789!1.27e-07!18;CL:0002420!1.27e-07!18;CL:0002419!1.27e-07!18;CL:0000790!1.27e-07!18;CL:0000819!4.78e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000945;6.01e-10;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.92e-10,24;CL:0000826,5.92e-10,24;CL:0000838,4.63e-08,52;CL:0000542,6.47e-08,53;CL:0000051,6.47e-08,53 | |||
|ontology_enrichment_development_v019=UBERON:0006965;1.07e-13;2 | |||
|ontology_enrichment_disease=DOID:0060058!2.00e-20!10;DOID:2531!9.98e-08!51;DOID:0060083!9.98e-08!51;DOID:630!2.99e-07!1;DOID:0050177!2.99e-07!1;DOID:0050427!2.99e-07!1;DOID:12603!3.78e-07!1;DOID:0060073!4.78e-07!1;DOID:8675!4.78e-07!1 | |ontology_enrichment_disease=DOID:0060058!2.00e-20!10;DOID:2531!9.98e-08!51;DOID:0060083!9.98e-08!51;DOID:630!2.99e-07!1;DOID:0050177!2.99e-07!1;DOID:0050427!2.99e-07!1;DOID:12603!3.78e-07!1;DOID:0060073!4.78e-07!1;DOID:8675!4.78e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:630;1.11e-25;1!DOID:0050177;1.11e-25;1!DOID:0050427;1.11e-25;1!DOID:0060058;7.74e-23;10 | |||
|ontology_enrichment_disease_v019_2=DOID:630,9.79e-26,1;DOID:0050177,9.79e-26,1;DOID:0050427,9.79e-26,1;DOID:0060058,8.04e-23,10;DOID:2531,3.33e-08,51;DOID:0060083,3.33e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0004177!3.69e-13!7;UBERON:0002106!4.86e-08!3;UBERON:0004854!4.86e-08!3;UBERON:0009034!4.86e-08!3;UBERON:0002095!4.86e-08!3;UBERON:0004782!4.86e-08!3;UBERON:0003281!4.86e-08!3;UBERON:0009664!4.86e-08!3;UBERON:0002296!4.86e-08!3;UBERON:0005602!4.86e-08!3;UBERON:0001179!4.86e-08!3;UBERON:0006293!4.86e-08!3;UBERON:0002370!6.21e-07!4;UBERON:0005058!6.21e-07!4;UBERON:0009113!6.21e-07!4;UBERON:0003295!6.21e-07!4;UBERON:0005562!6.21e-07!4;UBERON:0001154!8.98e-07!1;UBERON:0001153!8.98e-07!1 | |ontology_enrichment_uberon=UBERON:0004177!3.69e-13!7;UBERON:0002106!4.86e-08!3;UBERON:0004854!4.86e-08!3;UBERON:0009034!4.86e-08!3;UBERON:0002095!4.86e-08!3;UBERON:0004782!4.86e-08!3;UBERON:0003281!4.86e-08!3;UBERON:0009664!4.86e-08!3;UBERON:0002296!4.86e-08!3;UBERON:0005602!4.86e-08!3;UBERON:0001179!4.86e-08!3;UBERON:0006293!4.86e-08!3;UBERON:0002370!6.21e-07!4;UBERON:0005058!6.21e-07!4;UBERON:0009113!6.21e-07!4;UBERON:0003295!6.21e-07!4;UBERON:0005562!6.21e-07!4;UBERON:0001154!8.98e-07!1;UBERON:0001153!8.98e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.14e-50;2!UBERON:0005058;1.14e-50;2!UBERON:0009113;1.14e-50;2!UBERON:0004177;5.44e-21;5!UBERON:0005057;5.44e-21;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.73e-26,4;UBERON:0005058,6.73e-26,4;UBERON:0009113,6.73e-26,4;UBERON:0003295,6.73e-26,4;UBERON:0005562,6.73e-26,4;UBERON:0003351,1.22e-17,6;UBERON:0004177,2.85e-15,7;UBERON:0005057,2.85e-15,7;UBERON:0000974,5.41e-11,10;UBERON:0003408,5.41e-11,10;UBERON:0001042,5.41e-11,10;UBERON:0009145,5.41e-11,10;UBERON:0006562,4.42e-10,11;UBERON:0009722,4.42e-10,11;UBERON:0007690,4.42e-10,11 | |||
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|short_description=p6@SH3TC1 | |short_description=p6@SH3TC1 | ||
}} | }} |
Latest revision as of 22:58, 18 September 2015
Short description: | p6@SH3TC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SH3TC1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_ENST00000502350, uc003gky.2_5end |
EntrezGene: | SH3TC1 |
HGNC: | 26009 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.92e-10 | 24 |
pro-B cell | 5.92e-10 | 24 |
lymphoid lineage restricted progenitor cell | 4.63e-08 | 52 |
lymphocyte | 6.47e-08 | 53 |
common lymphoid progenitor | 6.47e-08 | 53 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.73e-26 | 4 |
hemolymphoid system gland | 6.73e-26 | 4 |
thymic region | 6.73e-26 | 4 |
pharyngeal gland | 6.73e-26 | 4 |
thymus primordium | 6.73e-26 | 4 |
pharyngeal epithelium | 1.22e-17 | 6 |
hemopoietic organ | 2.85e-15 | 7 |
immune organ | 2.85e-15 | 7 |
neck | 5.41e-11 | 10 |
gland of gut | 5.41e-11 | 10 |
chordate pharynx | 5.41e-11 | 10 |
pharyngeal region of foregut | 5.41e-11 | 10 |
pharynx | 4.42e-10 | 11 |
entire pharyngeal arch endoderm | 4.42e-10 | 11 |
early pharyngeal endoderm | 4.42e-10 | 11 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 9.79e-26 | 1 |
monogenic disease | 9.79e-26 | 1 |
xeroderma pigmentosum | 9.79e-26 | 1 |
lymphoma | 8.04e-23 | 10 |
hematologic cancer | 3.33e-08 | 51 |
immune system cancer | 3.33e-08 | 51 |