FFCP PHASE1:Hg19::chr3:58200329..58200340,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1776 | |EntrezGene=1776 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2959 | |HGNC=2959 | ||
|TSSclassifier=strong | |||
|UniProt=Q13609,C9J0L2 | |UniProt=Q13609,C9J0L2 | ||
|association_with_transcript=57bp_to_ENST00000318316,ENST00000460422,NM_004944,uc003djp.1_5end | |association_with_transcript=57bp_to_ENST00000318316,ENST00000460422,NM_004944,uc003djp.1_5end | ||
|cluster_id=chr3:58200329..58200340,- | |||
|coexpression_cluster_id=C44 | |||
|description=CAGE_peak_8_at_DNASE1L3_5end | |description=CAGE_peak_8_at_DNASE1L3_5end | ||
|id=chr3:58200329..58200340,- | |id=chr3:58200329..58200340,- | ||
|ontology_enrichment_celltype=CL:0000784!6.56e-15!3;CL:0000451!1.18e-14!10;CL:0000767!6.68e-14!3;CL:0000738!1.10e-13!140;CL:0000840!1.82e-12!5;CL:0001029!1.82e-12!5;CL:0001014!2.42e-10!2;CL:0001016!2.42e-10!2;CL:0000037!4.40e-10!172;CL:0000566!4.40e-10!172;CL:0000988!3.20e-09!182;CL:0000990!2.55e-08!8;CL:0000945!3.12e-08!24;CL:0000826!3.12e-08!24;CL:0002032!1.06e-07!165;CL:0000837!1.06e-07!165;CL:0002087!1.14e-07!119;CL:0002031!2.81e-07!124 | |ontology_enrichment_celltype=CL:0000784!6.56e-15!3;CL:0000451!1.18e-14!10;CL:0000767!6.68e-14!3;CL:0000738!1.10e-13!140;CL:0000840!1.82e-12!5;CL:0001029!1.82e-12!5;CL:0001014!2.42e-10!2;CL:0001016!2.42e-10!2;CL:0000037!4.40e-10!172;CL:0000566!4.40e-10!172;CL:0000988!3.20e-09!182;CL:0000990!2.55e-08!8;CL:0000945!3.12e-08!24;CL:0000826!3.12e-08!24;CL:0002032!1.06e-07!165;CL:0000837!1.06e-07!165;CL:0002087!1.14e-07!119;CL:0002031!2.81e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000784;3.46e-55;3!CL:0000451;3.58e-41;10!CL:0001014;9.84e-37;2!CL:0001016;9.84e-37;2!CL:0000840;1.07e-27;5!CL:0000946;2.25e-19;1!CL:0000786;2.25e-19;1!CL:0000990;1.01e-18;8!CL:0000945;1.08e-18;24!CL:0000453;2.34e-15;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,3.47e-55,3;CL:0000451,3.58e-41,10;CL:0001014,9.84e-37,2;CL:0001016,9.84e-37,2;CL:0000840,1.12e-27,5;CL:0001029,1.12e-27,5;CL:0000946,2.25e-19,1;CL:0000786,2.25e-19,1;CL:0000980,2.25e-19,1;CL:0000990,1.04e-18,8;CL:0000945,1.10e-18,24;CL:0000826,1.10e-18,24;CL:0000453,2.34e-15,5;CL:0000738,1.63e-12,136;CL:0000785,2.27e-10,2;CL:0000955,2.27e-10,2;CL:0000818,2.27e-10,2;CL:0000954,2.27e-10,2;CL:0000816,2.27e-10,2;CL:0000037,5.18e-10,168;CL:0000988,1.81e-09,177;CL:0002031,5.10e-09,120;CL:0000838,1.12e-08,52;CL:0000542,1.63e-08,53;CL:0000051,1.63e-08,53;CL:0000817,2.47e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000954;2.27e-10;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002106!9.89e-14!3;UBERON:0004854!9.89e-14!3;UBERON:0009034!9.89e-14!3;UBERON:0002095!9.89e-14!3;UBERON:0004782!9.89e-14!3;UBERON:0003281!9.89e-14!3;UBERON:0009664!9.89e-14!3;UBERON:0002296!9.89e-14!3;UBERON:0005602!9.89e-14!3;UBERON:0001179!9.89e-14!3;UBERON:0006293!9.89e-14!3;UBERON:0004177!5.01e-10!7;UBERON:0002390!2.66e-08!102;UBERON:0003061!2.66e-08!102;UBERON:0002193!3.01e-08!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;1.99e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.93e-07,3;UBERON:0004854,1.93e-07,3;UBERON:0009034,1.93e-07,3;UBERON:0002095,1.93e-07,3;UBERON:0004782,1.93e-07,3;UBERON:0003281,1.93e-07,3;UBERON:0009664,1.93e-07,3;UBERON:0002296,1.93e-07,3;UBERON:0005602,1.93e-07,3;UBERON:0001179,1.93e-07,3;UBERON:0006293,1.93e-07,3 | |||
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| ||
|short_description=p8@DNASE1L3 | |short_description=p8@DNASE1L3 | ||
}} | }} |
Latest revision as of 05:16, 19 September 2015
Short description: | p8@DNASE1L3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_DNASE1L3_5end |
Coexpression cluster: | C44_Dendritic_CD19_CD133_granulocyte_acute_thymus_immature |
Association with transcript: | 57bp_to_ENST00000318316, ENST00000460422, NM_004944, uc003djp.1_5end |
EntrezGene: | DNASE1L3 |
HGNC: | 2959 |
UniProt: | Q13609C9J0L2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 3.47e-55 | 3 |
dendritic cell | 3.58e-41 | 10 |
CD1a-positive Langerhans cell | 9.84e-37 | 2 |
immature CD1a-positive Langerhans cell | 9.84e-37 | 2 |
immature conventional dendritic cell | 1.12e-27 | 5 |
common dendritic progenitor | 1.12e-27 | 5 |
antibody secreting cell | 2.25e-19 | 1 |
plasma cell | 2.25e-19 | 1 |
plasmablast | 2.25e-19 | 1 |
conventional dendritic cell | 1.04e-18 | 8 |
lymphocyte of B lineage | 1.10e-18 | 24 |
pro-B cell | 1.10e-18 | 24 |
Langerhans cell | 2.34e-15 | 5 |
leukocyte | 1.63e-12 | 136 |
mature B cell | 2.27e-10 | 2 |
pre-B-II cell | 2.27e-10 | 2 |
transitional stage B cell | 2.27e-10 | 2 |
small pre-B-II cell | 2.27e-10 | 2 |
immature B cell | 2.27e-10 | 2 |
hematopoietic stem cell | 5.18e-10 | 168 |
hematopoietic cell | 1.81e-09 | 177 |
hematopoietic lineage restricted progenitor cell | 5.10e-09 | 120 |
lymphoid lineage restricted progenitor cell | 1.12e-08 | 52 |
lymphocyte | 1.63e-08 | 53 |
common lymphoid progenitor | 1.63e-08 | 53 |
precursor B cell | 2.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.93e-07 | 3 |
gastrointestinal system mesentery | 1.93e-07 | 3 |
stomach region | 1.93e-07 | 3 |
mesentery | 1.93e-07 | 3 |
gastrointestinal system serosa | 1.93e-07 | 3 |
mesentery of stomach | 1.93e-07 | 3 |
gut mesentery | 1.93e-07 | 3 |
dorsal mesentery | 1.93e-07 | 3 |
dorsal mesogastrium | 1.93e-07 | 3 |
peritoneal cavity | 1.93e-07 | 3 |
spleen primordium | 1.93e-07 | 3 |