FFCP PHASE1:Hg19::chr4:88450273..88450287,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=8404 | |EntrezGene=8404 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=11220 | |HGNC=11220 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=B4E2Z0 | |UniProt=B4E2Z0 | ||
|association_with_transcript=-29bp_to_ENST00000503414_5end | |association_with_transcript=-29bp_to_ENST00000503414_5end | ||
|cluster_id=chr4:88450273..88450287,- | |||
|coexpression_cluster_id=C371 | |coexpression_cluster_id=C371 | ||
|description=CAGE_peak_5_at_SPARCL1_5end | |description=CAGE_peak_5_at_SPARCL1_5end | ||
Latest revision as of 05:56, 19 September 2015
| Short description: | p5@SPARCL1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_5_at_SPARCL1_5end |
| Coexpression cluster: | C371_occipital_medial_brain_parietal_amygdala_frontal_olfactory |
| Association with transcript: | -29bp_to_ENST00000503414_5end |
| EntrezGene: | SPARCL1 |
| HGNC: | 11220 |
| UniProt: | B4E2Z0 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p5@SPARCL1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| adult organism | 4.83e-112 | 114 |
| neural tube | 2.12e-62 | 56 |
| neural rod | 2.12e-62 | 56 |
| future spinal cord | 2.12e-62 | 56 |
| neural keel | 2.12e-62 | 56 |
| regional part of nervous system | 1.30e-57 | 53 |
| regional part of brain | 1.30e-57 | 53 |
| central nervous system | 2.76e-53 | 81 |
| regional part of forebrain | 9.84e-50 | 41 |
| forebrain | 9.84e-50 | 41 |
Showing 1 to 10 of 74 entries
