FFCP PHASE1:Hg19::chr12:55413751..55413765,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=58158 | |EntrezGene=58158 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13802 | |HGNC=13802 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HD90,Q8IW56 | |UniProt=Q9HD90,Q8IW56 | ||
|association_with_transcript=22bp_to_ENST00000242994,NM_021191,uc001sgp.3_5end | |association_with_transcript=22bp_to_ENST00000242994,NM_021191,uc001sgp.3_5end | ||
|cluster_id=chr12:55413751..55413765,+ | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_1_at_NEUROD4_5end | |description=CAGE_peak_1_at_NEUROD4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000047!2.28e-12!8;CL:0000540!7.14e-12!6;CL:0000031!7.14e-12!6;CL:0000404!7.14e-12!6;CL:0002322!8.76e-09!5;CL:0002319!1.50e-08!25 | |ontology_enrichment_celltype=CL:0000047!2.28e-12!8;CL:0000540!7.14e-12!6;CL:0000031!7.14e-12!6;CL:0000404!7.14e-12!6;CL:0002322!8.76e-09!5;CL:0002319!1.50e-08!25 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3119;3.70e-10;14 | |ontology_enrichment_disease_v019=DOID:3119;3.70e-10;14 | ||
|ontology_enrichment_disease_v019_2=DOID:3119,3.93e-10,14 | |||
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| ||
|short_description=p1@NEUROD4 | |short_description=p1@NEUROD4 | ||
}} | }} |
Latest revision as of 07:26, 19 September 2015
Short description: | p1@NEUROD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NEUROD4_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 22bp_to_ENST00000242994, NM_021191, uc001sgp.3_5end |
EntrezGene: | NEUROD4 |
HGNC: | 13802 |
UniProt: | Q9HD90Q8IW56 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 1.97e-36 | 4 |
neuroendocrine gland | 1.97e-36 | 4 |
diencephalon | 5.92e-21 | 7 |
future diencephalon | 5.92e-21 | 7 |
pineal body | 3.13e-19 | 2 |
regional part of epithalamus | 3.13e-19 | 2 |
secretory circumventricular organ | 3.13e-19 | 2 |
circumventricular organ | 3.13e-19 | 2 |
epithalamus | 3.13e-19 | 2 |
pituitary gland | 4.91e-19 | 2 |
nervous system | 1.21e-11 | 89 |
central nervous system | 6.53e-11 | 81 |
pre-chordal neural plate | 3.45e-10 | 61 |
regional part of diencephalon | 4.45e-10 | 4 |
regional part of forebrain | 1.55e-09 | 41 |
forebrain | 1.55e-09 | 41 |
anterior neural tube | 1.55e-09 | 41 |
future forebrain | 1.55e-09 | 41 |
regional part of nervous system | 2.33e-09 | 53 |
regional part of brain | 2.33e-09 | 53 |
neural plate | 5.32e-09 | 82 |
presumptive neural plate | 5.32e-09 | 82 |
neural tube | 8.20e-09 | 56 |
neural rod | 8.20e-09 | 56 |
future spinal cord | 8.20e-09 | 56 |
neural keel | 8.20e-09 | 56 |
neurectoderm | 1.62e-08 | 86 |
ectoderm-derived structure | 2.05e-07 | 171 |
ectoderm | 2.05e-07 | 171 |
presumptive ectoderm | 2.05e-07 | 171 |
brain | 5.53e-07 | 68 |
future brain | 5.53e-07 | 68 |
ecto-epithelium | 8.57e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 3.93e-10 | 14 |