FFCP PHASE1:Hg19::chr1:18807498..18807518,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=127707 | |EntrezGene=127707 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26791 | |HGNC=26791 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-146bp_to_ENST00000540290,uc009vpg.2_5end | |association_with_transcript=-146bp_to_ENST00000540290,uc009vpg.2_5end | ||
|cluster_id=chr1:18807498..18807518,+ | |||
|coexpression_cluster_id=C2387 | |||
|description=CAGE_peak_1_at_KLHDC7A_5end | |description=CAGE_peak_1_at_KLHDC7A_5end | ||
|id=chr1:18807498..18807518,+ | |id=chr1:18807498..18807518,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.55e-11!254;CL:0002322!1.59e-08!5;CL:1000507!1.77e-08!12;CL:1000494!1.77e-08!12;CL:0000223!6.10e-08!59;CL:1000497!1.11e-07!18;CL:0002518!1.11e-07!18 | |ontology_enrichment_celltype=CL:0000066!2.55e-11!254;CL:0002322!1.59e-08!5;CL:1000507!1.77e-08!12;CL:1000494!1.77e-08!12;CL:0000223!6.10e-08!59;CL:1000497!1.11e-07!18;CL:0002518!1.11e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.40e-19;5!CL:1000507;2.00e-12;10!CL:1000494;2.00e-12;10!CL:1000497;1.06e-09;17!CL:0002518;1.06e-09;17!CL:1000449;4.41e-08;15!CL:0000182;2.05e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.46e-19,5;CL:1000507,2.65e-12,10;CL:1000494,2.65e-12,10;CL:1000497,1.29e-09,17;CL:0002518,1.29e-09,17;CL:0000066,3.33e-08,253;CL:1000449,5.27e-08,15;CL:0000182,2.39e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0009497;9.64e-10;13!UBERON:0003104;1.88e-08;31!UBERON:0004161;2.64e-08;11 | |||
|ontology_enrichment_disease=DOID:305!3.80e-14!106;DOID:299!2.33e-11!25;DOID:0050687!1.13e-10!143 | |ontology_enrichment_disease=DOID:305!3.80e-14!106;DOID:299!2.33e-11!25;DOID:0050687!1.13e-10!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005177!1.02e-11!107;UBERON:0005172!5.57e-11!55;UBERON:0005173!5.57e-11!55;UBERON:0000466!1.31e-10!126;UBERON:0009569!1.77e-10!113;UBERON:0002417!6.33e-10!61;UBERON:0000916!6.33e-10!61;UBERON:0000489!6.15e-09!32;UBERON:0002113!7.31e-09!27;UBERON:0003918!7.31e-09!27;UBERON:0005095!7.31e-09!27;UBERON:0007687!7.31e-09!27;UBERON:0000058!8.87e-09!26;UBERON:0009773!1.77e-08!12;UBERON:0001231!1.77e-08!12;UBERON:0004810!1.77e-08!12;UBERON:0007499!4.06e-08!25;UBERON:0009856!1.17e-07!26;UBERON:0004921!1.49e-07!129;UBERON:0004185!1.49e-07!129;UBERON:0009497!4.99e-07!25;UBERON:0000015!4.99e-07!25;UBERON:0002423!4.99e-07!25;UBERON:0006235!4.99e-07!25;UBERON:0004161!4.99e-07!25;UBERON:0001007!6.27e-07!155;UBERON:0001555!6.27e-07!155;UBERON:0007026!6.27e-07!155;UBERON:0005911!6.93e-07!82;UBERON:0006554!7.79e-07!44;UBERON:0000464!8.36e-07!104;UBERON:0006555!9.84e-07!17;UBERON:0005103!9.84e-07!17;UBERON:0000083!9.84e-07!17;UBERON:0009201!9.84e-07!17;UBERON:0004819!9.84e-07!17;UBERON:0006553!9.84e-07!17;UBERON:0003074!9.84e-07!17;UBERON:0003060!9.84e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.00e-12;10!UBERON:0009773;2.00e-12;10!UBERON:0001231;2.00e-12;10!UBERON:0004810;2.00e-12;10!UBERON:0005172;1.56e-11;52!UBERON:0005173;1.56e-11;52!UBERON:0002113;3.58e-11;24!UBERON:0011143;3.58e-11;24!UBERON:0002423;2.08e-10;25!UBERON:0000489;5.78e-09;29!UBERON:0000488;1.12e-08;4!UBERON:0006554;1.30e-08;30!UBERON:0001008;1.30e-08;30!UBERON:0006555;4.41e-08;15!UBERON:0004819;4.41e-08;15!UBERON:0001285;4.41e-08;15!UBERON:0007684;4.41e-08;15!UBERON:0002417;2.08e-07;58!UBERON:0000916;2.08e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005172,8.03e-18,54;UBERON:0005173,8.03e-18,54;UBERON:0002417,1.31e-15,60;UBERON:0000916,1.31e-15,60;UBERON:0002113,1.90e-12,26;UBERON:0003918,1.90e-12,26;UBERON:0011143,1.90e-12,26;UBERON:0005095,1.90e-12,26;UBERON:0007687,1.90e-12,26;UBERON:0005177,2.63e-12,101;UBERON:0004810,2.65e-12,10;UBERON:0009497,2.70e-10,25;UBERON:0000015,2.70e-10,25;UBERON:0002423,2.70e-10,25;UBERON:0006235,2.70e-10,25;UBERON:0004161,2.70e-10,25;UBERON:0000489,3.98e-10,31;UBERON:0006555,5.21e-10,16;UBERON:0004819,5.21e-10,16;UBERON:0009569,1.96e-09,112;UBERON:0000488,1.14e-08,4;UBERON:0007499,4.21e-08,25;UBERON:0004211,5.27e-08,15;UBERON:0009773,5.27e-08,15;UBERON:0001231,5.27e-08,15;UBERON:0001285,5.27e-08,15;UBERON:0007684,5.27e-08,15;UBERON:0004208,5.27e-08,15;UBERON:0009856,9.62e-08,26;UBERON:0006554,2.23e-07,47;UBERON:0008835,2.97e-07,22;UBERON:0003894,2.97e-07,22;UBERON:0003929,3.17e-07,54;UBERON:0001008,3.51e-07,48;UBERON:0009854,6.74e-07,23 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.737201809504527,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0.684372125364421,0.753255837568817,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70162670895322,1.10864698731282,0.351339142772504,5.43563163315507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41526377162867,3.5783037446801,2.20768491452085,1.55491582523056,4.03713361401005,6.20461510428911,0,0,0,0,0,0,0.168584690078102,0,0.110293972732394,0,0,0,0,0,0,0,0,0,1.26755034821831,2.94848165003288,0.590789906681404,0,1.47586126251736,1.54411029268673,0,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0.432359860250884,0.37872730027914,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69203229428271,0.200506470303285,0,0,0,0,1.80479845162965,1.23224539367064,1.56869953835371,1.46139224653261,0.422206515571503,0,0,0,0,0,1.00337954770971,0.509752546090077,0.831076008928724,1.34324852833307,0,0,0.256450125116389,0,0,2.36994326789761,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97701981631236,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,1.42068073403207,0,0.593929361665277,0,0,0,0,0,0,0,0,0.755798243562828,0,0,0,0.179736702294654,1.43216939740487,0,0.394573622547734,0,0,0,0.463840490809256,0,0,0.61221999997337,0,0,0.508507300585533,0.236387681767936,0,0,0,0,0,0,0.110579259931225,0,1.75508317723178,0.10893846351899,0,0.384751292518985,0,0.46112780877612,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,1.95879369790977,1.41353071433941,0,0,0.265372693510018,0.611030144933625,0,0,0,0.134802265961354,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0.284609546029793,0,5.72747136505932,0,0.174118413160805,1.39781334593624,0,0,0,0,0.0969890164884194,0,0.451961481561065,0.137041924646751,0,0.189932387867636,1.36885967914362,0,2.34798294213288,0.799238438328521,0.144090417154106,0,0,0,0,0.235694034616795,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73323001075892,1.15382201733633,0.876246070104404,1.37798474120648,0,0,0,3.69732241469544,3.43848591493084,2.49264202817511,0,0,0,0,22.5384322875707,6.87155104568475,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3707013745959,0,0,0,2.39521573038061,0,1.38823636338003,0.157204305099666,0,0,0,0,0,1.63205341010842,1.0027595760908,0.919036730290385,2.29510841496863,0.314108192500469,0,0,0,0.573409195690071,0.998361463831671,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0.226705925512272,0,0,0,0.617602894321944,0.438568099157414,0,0.38582807654183,0,3.58738126023125,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.207471757392654,0.484426936895553,0,0.0981477185010256,0,0,0.115525666150338,0,0,0,0,0,2.34454203369928,0,0,0.591424344868181,0.202612753855184,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.0887023701626388,0,0,0,0.0657727735628491,0,0,0.235479278551542,0,0,0,17.2742072974897,0.47775168788705,1.57248397188644,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0.22910686854405,0.31020638566432,0,17.6731582240512,0.098150233615243,3.41370189950354,0,0,0,0,0,0,0,0,0,0.603851374266694,0,0.218559560503957,12.6985670017611,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0.160482733378337,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0.764859003745869,0,2.2437542543236,2.6721740526556,0,0,0.0757786982182394,0,0,0,0,0.476128862927481,0,0,0,0.509177266225319,0.808468755832877,0.217716747896961,0,0,0.143444410785353,0,0,0,0,0.179650404213174,0,0,0,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.737201809504527,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0.684372125364421,0.753255837568817,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70162670895322,1.10864698731282,0.351339142772504,5.43563163315507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41526377162867,3.5783037446801,2.20768491452085,1.55491582523056,4.03713361401005,6.20461510428911,0,0,0,0,0,0,0.168584690078102,0,0.110293972732394,0,0,0,0,0,0,0,0,0,1.26755034821831,2.94848165003288,0.590789906681404,0,1.47586126251736,1.54411029268673,0,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0.432359860250884,0.37872730027914,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69203229428271,0.200506470303285,0,0,0,0,1.80479845162965,1.23224539367064,1.56869953835371,1.46139224653261,0.422206515571503,0,0,0,0,0,1.00337954770971,0.509752546090077,0.831076008928724,1.34324852833307,0,0,0.256450125116389,0,0,2.36994326789761,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97701981631236,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,1.42068073403207,0,0.593929361665277,0,0,0,0,0,0,0,0,0.755798243562828,0,0,0,0.179736702294654,1.43216939740487,0,0.394573622547734,0,0,0,0.463840490809256,0,0,0.61221999997337,0,0,0.508507300585533,0.236387681767936,0,0,0,0,0,0,0.110579259931225,0,1.75508317723178,0.10893846351899,0,0.384751292518985,0,0.46112780877612,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,1.95879369790977,1.41353071433941,0,0,0.265372693510018,0.611030144933625,0,0,0,0.134802265961354,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0.284609546029793,0,5.72747136505932,0,0.174118413160805,1.39781334593624,0,0,0,0,0.0969890164884194,0,0.451961481561065,0.137041924646751,0,0.189932387867636,1.36885967914362,0,2.34798294213288,0.799238438328521,0.144090417154106,0,0,0,0,0.235694034616795,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73323001075892,1.15382201733633,0.876246070104404,1.37798474120648,0,0,0,3.69732241469544,3.43848591493084,2.49264202817511,0,0,0,0,22.5384322875707,6.87155104568475,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3707013745959,0,0,0,2.39521573038061,0,1.38823636338003,0.157204305099666,0,0,0,0,0,1.63205341010842,1.0027595760908,0.919036730290385,2.29510841496863,0.314108192500469,0,0,0,0.573409195690071,0.998361463831671,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0.226705925512272,0,0,0,0.617602894321944,0.438568099157414,0,0.38582807654183,0,3.58738126023125,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.207471757392654,0.484426936895553,0,0.0981477185010256,0,0,0.115525666150338,0,0,0,0,0,2.34454203369928,0,0,0.591424344868181,0.202612753855184,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.0887023701626388,0,0,0,0.0657727735628491,0,0,0.235479278551542,0,0,0,17.2742072974897,0.47775168788705,1.57248397188644,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0.22910686854405,0.31020638566432,0,17.6731582240512,0.098150233615243,3.41370189950354,0,0,0,0,0,0,0,0,0,0.603851374266694,0,0.218559560503957,12.6985670017611,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0.160482733378337,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0.764859003745869,0,2.2437542543236,2.6721740526556,0,0,0.0757786982182394,0,0,0,0,0.476128862927481,0,0,0,0.509177266225319,0.808468755832877,0.217716747896961,0,0,0.143444410785353,0,0,0,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p1@KLHDC7A | |short_description=p1@KLHDC7A | ||
}} | }} |
Latest revision as of 08:51, 19 September 2015
Short description: | p1@KLHDC7A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KLHDC7A_5end |
Coexpression cluster: | C2387_kidney_renal_serous_smallcell_clear_mesothelioma_HES3GFP |
Association with transcript: | -146bp_to_ENST00000540290, uc009vpg.2_5end |
EntrezGene: | KLHDC7A |
HGNC: | 26791 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.46e-19 | 5 |
kidney tubule cell | 2.65e-12 | 10 |
nephron tubule epithelial cell | 2.65e-12 | 10 |
kidney cell | 1.29e-09 | 17 |
kidney epithelial cell | 1.29e-09 | 17 |
epithelial cell | 3.33e-08 | 253 |
epithelial cell of nephron | 5.27e-08 | 15 |
hepatocyte | 2.39e-07 | 12 |