FFCP PHASE1:Hg19::chr19:50528679..50528701,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51231 | |EntrezGene=51231 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18996 | |HGNC=18996 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IV63 | |UniProt=Q8IV63 | ||
|association_with_transcript=-43bp_to_uc002prg.2,uc002prl.2,uc010ens.2,uc010ent.1,uc010ybl.1,uc010ybm.1,uc010ybn.1_5end | |association_with_transcript=-43bp_to_uc002prg.2,uc002prl.2,uc010ens.2,uc010ent.1,uc010ybl.1,uc010ybm.1,uc010ybn.1_5end | ||
|cluster_id=chr19:50528679..50528701,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_VRK3_5end | |description=CAGE_peak_3_at_VRK3_5end | ||
|id=chr19:50528679..50528701,- | |id=chr19:50528679..50528701,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;3.96e-07;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.96e-12!115;UBERON:0001049!3.11e-08!57;UBERON:0005068!3.11e-08!57;UBERON:0006241!3.11e-08!57;UBERON:0007135!3.11e-08!57;UBERON:0002780!4.19e-08!41;UBERON:0001890!4.19e-08!41;UBERON:0006240!4.19e-08!41;UBERON:0005743!4.58e-08!86;UBERON:0002616!8.42e-08!59;UBERON:0001017!1.25e-07!82;UBERON:0003080!1.57e-07!42;UBERON:0000955!4.04e-07!69;UBERON:0006238!4.04e-07!69;UBERON:0003075!5.96e-07!86;UBERON:0007284!5.96e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002784;1.68e-07;4!UBERON:0001905;3.96e-07;2!UBERON:0002757;3.96e-07;2!UBERON:0010134;3.96e-07;2!UBERON:0005408;3.96e-07;2!UBERON:0001899;3.96e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.69e-10,114;UBERON:0002780,3.74e-08,41;UBERON:0001890,3.74e-08,41;UBERON:0003080,3.74e-08,41;UBERON:0006240,3.74e-08,41;UBERON:0000073,4.24e-08,53;UBERON:0002616,4.24e-08,53;UBERON:0001049,1.64e-07,56;UBERON:0005068,1.64e-07,56;UBERON:0006241,1.64e-07,56;UBERON:0007135,1.64e-07,56;UBERON:0002784,1.75e-07,4;UBERON:0001905,3.34e-07,2;UBERON:0002757,3.34e-07,2;UBERON:0010134,3.34e-07,2;UBERON:0005408,3.34e-07,2;UBERON:0001899,3.34e-07,2 | |||
|phase1_expression=0.363356758541113,0,0.704772020479856,0,0,0,0,1.89515962028049,0.522371256399677,0.737201809504527,0.697801167972428,0.873765488520689,0,0.123766352960047,0,0,0.602694528023977,0,0.487932798790507,0.61560529038394,0.204000691244253,0,0.286235987131057,0.410623275218653,0,0.458480434487708,0.164201178899891,0.0787107813136792,0,0.767658796194425,0.309632246632152,0,0.90361775633475,0,0.154934401160603,0.284338464974843,0.587200878669695,0,0,0,0,0.32389366601898,0,0.145398238779565,0.377875943688809,0.242584061187816,0,0,0,0.28769239232215,0,0.236482229888585,0,0,1.35426486594342,0,0.545812300115692,0.449446968890169,0,0.320929027076094,0,1.31940520074686,0,0.426224750532694,0.290209238628584,0,0.622822248995575,0.251248665256743,0,0,0,0.368277635987565,0,0.211255286311942,0.212604299965044,0,0.22465726229299,0.300353785683013,0.32145117339416,0,0.59675003159727,0.91332076882317,0,0,0.889509253863555,0,0.800791974072025,1.72425731986345,1.32208974556972,0,0,0,0.382273228125229,0,1.12101712596307,0.263384084775077,0.196709770113833,0,0,0,0.32592226663359,0,0,0.111410456885174,0.589211814949674,0,0.541607727530031,0.128091319725675,0.130059347559878,0.164437904603676,0.552700035571697,0,0.296573126324121,0.267540828089713,0,0.226618685395132,0,0,0,0,0,0,0,0.255973222308837,0,0.236777252044017,0,0,0.267440195783507,0.289648807765598,0,0,0.255725123687061,0.361439152384566,0.50133791063589,0.144846518960824,0,0,0.567208902984407,0,0.175669571386252,10.1508783510727,0,0.741568885568859,0,0.348259474598534,0.664789802594326,0.476981248610684,0,0.74291500265913,0.993812036833525,0,1.04142150482278,0.56530794192401,0,0,0.208994966536811,0.258416759169329,0.71153252537342,0.66944122552934,0,0,0,0.367663080345869,0,0.446498641420399,0.44905874525234,0.225222960966644,0,0.949265659568129,0,0,0,0.872188104285069,0,0.12663051166458,0.264818361626438,0,0,0.560677600142307,1.06748995729705,0,0,0.269421344139376,0.163461903113459,0.454072282934794,0,0.234321431833797,0.624320153660641,0,0.149448680551801,0,0.647491777472526,0.421352420106746,0,0.122834317311768,0.206651562351531,0,0,0.910161361938026,1.43723628363248,1.0100166837244,0.125118519871964,0.277064115484183,0.438977620880838,0,0.600952235626387,0.113432183160021,0.179389635688862,0,0.211931901159562,0.300091096084402,0.103052529238439,0,0,0.337552664482532,0.194874010322397,0.757301322732344,0.0920498986422993,0.969876340912871,0.355009592516614,0.10075209822764,0.339121184620975,0.57978255948989,0.545492241181669,0.860413786167011,0.609868530647977,0.265059536642971,0.116193942869518,0.310983165046111,0.756962552626885,0.36497735907583,0,0,0,0,0,0.236613600079688,0.168584690078102,0.241011029883482,0.330881918197182,0.217879444092406,0.71181185733329,0.269662616320329,0.588664395376038,0.769494313892781,0.738155454624648,1.40241773803446,0.8231480226628,0,1.26755034821831,0,0.590789906681404,0,0.614942192715568,0.514703430895577,0.439001141634502,1.1240175325762,0,0.185176890317059,0,2.07986957055916,0,0.463721619900307,0.117408694235822,0.288732895522148,0.462985512576611,0.190254152234598,0,0.858486162094873,0.492434012174795,0.234004265139238,0.297262324577456,0.93733833986777,0.16798212819886,0.992425680696705,0.0895585227028483,0.290633938513962,0.766765358330422,0.985326475791887,0.264145302039678,0.207328115540772,0.288239906833923,0.50496973370552,0.507983154337352,0,1.17217447210047,0,0.616964956219941,0,0.857479297891735,0.224262168690721,0,0.07333828582095,0.387815147273333,0,0,0,1.04007436911366,0,0,0.799266537048298,0.142977993658148,0,0,0,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0.821905290201534,0.358121926479791,0.224170287987055,0,0,0,1.01637849688985,1.30139853857622,0.773288812777695,0,1.27587750330633,1.49801404789436,0,0.414415513436035,0.36807447515742,0,0,0,0,0.315404830067869,0.117141414992713,0.300946099727719,0,0,0,0.368738337083406,0.695068915744663,1.17480694477644,0,0.206768026122887,0.215714200818617,0.106727557803444,0.303127571446259,0,0.30239029332968,0,0.306923946576125,0.280660094433074,0,0.511707249066704,0.321707842287215,0,0,0.177561725313127,0.0821271560138091,0,0.232420756919918,0.120859449591622,0.601519410909855,0.0920809889358963,0.574072240823034,0.182091168006717,0.131124414959424,0.902399225814824,0.462092022626489,0,0,0.527758144464379,1.13733384070897,0.340187410553031,0.215915916102139,0,0.270946437543853,0.501689773854853,0.509752546090077,0,0.223874754722178,2.19259876645935,0.784306353074702,1.02580050046556,0,0.976135183992909,0.412164046590889,0.366277859273374,0.41254749960294,0.574265537996172,0.650060246036521,0,0,0.462145851343933,0.15350367472613,0.137836572484531,0.214840489736547,0.145016693914229,0.596586391912706,0.0890320356467374,0.330569830721956,0,0.255225424989168,0.2023155617111,1.39453664789186,0.31481234683064,0,0.308033580176089,0.532306030317022,2.60979897622522,0.74129687641568,0.429374660225974,0.744316738719335,0,0.190630193923825,0.511795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|phase1_expression=0.363356758541113,0,0.704772020479856,0,0,0,0,1.89515962028049,0.522371256399677,0.737201809504527,0.697801167972428,0.873765488520689,0,0.123766352960047,0,0,0.602694528023977,0,0.487932798790507,0.61560529038394,0.204000691244253,0,0.286235987131057,0.410623275218653,0,0.458480434487708,0.164201178899891,0.0787107813136792,0,0.767658796194425,0.309632246632152,0,0.90361775633475,0,0.154934401160603,0.284338464974843,0.587200878669695,0,0,0,0,0.32389366601898,0,0.145398238779565,0.377875943688809,0.242584061187816,0,0,0,0.28769239232215,0,0.236482229888585,0,0,1.35426486594342,0,0.545812300115692,0.449446968890169,0,0.320929027076094,0,1.31940520074686,0,0.426224750532694,0.290209238628584,0,0.622822248995575,0.251248665256743,0,0,0,0.368277635987565,0,0.211255286311942,0.212604299965044,0,0.22465726229299,0.300353785683013,0.32145117339416,0,0.59675003159727,0.91332076882317,0,0,0.889509253863555,0,0.800791974072025,1.72425731986345,1.32208974556972,0,0,0,0.382273228125229,0,1.12101712596307,0.263384084775077,0.196709770113833,0,0,0,0.32592226663359,0,0,0.111410456885174,0.589211814949674,0,0.541607727530031,0.128091319725675,0.130059347559878,0.164437904603676,0.552700035571697,0,0.296573126324121,0.267540828089713,0,0.226618685395132,0,0,0,0,0,0,0,0.255973222308837,0,0.236777252044017,0,0,0.267440195783507,0.289648807765598,0,0,0.255725123687061,0.361439152384566,0.50133791063589,0.144846518960824,0,0,0.567208902984407,0,0.175669571386252,10.1508783510727,0,0.741568885568859,0,0.348259474598534,0.664789802594326,0.476981248610684,0,0.74291500265913,0.993812036833525,0,1.04142150482278,0.56530794192401,0,0,0.208994966536811,0.258416759169329,0.71153252537342,0.66944122552934,0,0,0,0.367663080345869,0,0.446498641420399,0.44905874525234,0.225222960966644,0,0.949265659568129,0,0,0,0.872188104285069,0,0.12663051166458,0.264818361626438,0,0,0.560677600142307,1.06748995729705,0,0,0.269421344139376,0.163461903113459,0.454072282934794,0,0.234321431833797,0.624320153660641,0,0.149448680551801,0,0.647491777472526,0.421352420106746,0,0.122834317311768,0.206651562351531,0,0,0.910161361938026,1.43723628363248,1.0100166837244,0.125118519871964,0.277064115484183,0.438977620880838,0,0.600952235626387,0.113432183160021,0.179389635688862,0,0.211931901159562,0.300091096084402,0.103052529238439,0,0,0.337552664482532,0.194874010322397,0.757301322732344,0.0920498986422993,0.969876340912871,0.355009592516614,0.10075209822764,0.339121184620975,0.57978255948989,0.545492241181669,0.860413786167011,0.609868530647977,0.265059536642971,0.116193942869518,0.310983165046111,0.756962552626885,0.36497735907583,0,0,0,0,0,0.236613600079688,0.168584690078102,0.241011029883482,0.330881918197182,0.217879444092406,0.71181185733329,0.269662616320329,0.588664395376038,0.769494313892781,0.738155454624648,1.40241773803446,0.8231480226628,0,1.26755034821831,0,0.590789906681404,0,0.614942192715568,0.514703430895577,0.439001141634502,1.1240175325762,0,0.185176890317059,0,2.07986957055916,0,0.463721619900307,0.117408694235822,0.288732895522148,0.462985512576611,0.190254152234598,0,0.858486162094873,0.492434012174795,0.234004265139238,0.297262324577456,0.93733833986777,0.16798212819886,0.992425680696705,0.0895585227028483,0.290633938513962,0.766765358330422,0.985326475791887,0.264145302039678,0.207328115540772,0.288239906833923,0.50496973370552,0.507983154337352,0,1.17217447210047,0,0.616964956219941,0,0.857479297891735,0.224262168690721,0,0.07333828582095,0.387815147273333,0,0,0,1.04007436911366,0,0,0.799266537048298,0.142977993658148,0,0,0,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0.821905290201534,0.358121926479791,0.224170287987055,0,0,0,1.01637849688985,1.30139853857622,0.773288812777695,0,1.27587750330633,1.49801404789436,0,0.414415513436035,0.36807447515742,0,0,0,0,0.315404830067869,0.117141414992713,0.300946099727719,0,0,0,0.368738337083406,0.695068915744663,1.17480694477644,0,0.206768026122887,0.215714200818617,0.106727557803444,0.303127571446259,0,0.30239029332968,0,0.306923946576125,0.280660094433074,0,0.511707249066704,0.321707842287215,0,0,0.177561725313127,0.0821271560138091,0,0.232420756919918,0.120859449591622,0.601519410909855,0.0920809889358963,0.574072240823034,0.182091168006717,0.131124414959424,0.902399225814824,0.462092022626489,0,0,0.527758144464379,1.13733384070897,0.340187410553031,0.215915916102139,0,0.270946437543853,0.501689773854853,0.509752546090077,0,0.223874754722178,2.19259876645935,0.784306353074702,1.02580050046556,0,0.976135183992909,0.412164046590889,0.366277859273374,0.41254749960294,0.574265537996172,0.650060246036521,0,0,0.462145851343933,0.15350367472613,0.137836572484531,0.214840489736547,0.145016693914229,0.596586391912706,0.0890320356467374,0.330569830721956,0,0.255225424989168,0.2023155617111,1.39453664789186,0.31481234683064,0,0.308033580176089,0.532306030317022,2.60979897622522,0.74129687641568,0.429374660225974,0.744316738719335,0,0.190630193923825,0.511795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| ||
|short_description=p3@VRK3 | |short_description=p3@VRK3 | ||
}} | }} |
Latest revision as of 10:19, 19 September 2015
Short description: | p3@VRK3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_VRK3_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -43bp_to_uc002prg.2, uc002prl.2, uc010ens.2, uc010ent.1, uc010ybl.1, uc010ybm.1, uc010ybn.1_5end |
EntrezGene: | VRK3 |
HGNC: | 18996 |
UniProt: | Q8IV63 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 9.69e-10 | 114 |
regional part of forebrain | 3.74e-08 | 41 |
forebrain | 3.74e-08 | 41 |
anterior neural tube | 3.74e-08 | 41 |
future forebrain | 3.74e-08 | 41 |
regional part of nervous system | 4.24e-08 | 53 |
regional part of brain | 4.24e-08 | 53 |
neural tube | 1.64e-07 | 56 |
neural rod | 1.64e-07 | 56 |
future spinal cord | 1.64e-07 | 56 |
neural keel | 1.64e-07 | 56 |
regional part of diencephalon | 1.75e-07 | 4 |
pineal body | 3.34e-07 | 2 |
regional part of epithalamus | 3.34e-07 | 2 |
secretory circumventricular organ | 3.34e-07 | 2 |
circumventricular organ | 3.34e-07 | 2 |
epithalamus | 3.34e-07 | 2 |