FFCP PHASE1:Hg19::chr6:10419768..10419819,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:10419768..10419819,- to FFCP PHASE1:Hg19::chr6:10419768..10419819,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7020 | |EntrezGene=7020 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11742 | |HGNC=11742 | ||
|TSSclassifier=strong | |||
|UniProt=P05549,Q5TAV5 | |UniProt=P05549,Q5TAV5 | ||
|association_with_transcript=0bp_to_ENST00000464323,NM_001042425,uc003myt.2,uc011dii.1_5end | |||
|cluster_id=chr6:10419768..10419819,- | |||
|coexpression_cluster_id=C4538 | |||
|description=CAGE_peak_6_at_TFAP2A_5end | |||
|id=chr6:10419768..10419819,- | |||
|ontology_enrichment_celltype=CL:0000066!2.47e-37!254;CL:0002076!9.21e-17!43;CL:0002159!3.63e-14!13;CL:0000223!7.18e-12!59;CL:0002368!1.92e-09!13;CL:0002077!2.87e-09!33;CL:0000240!3.58e-09!6;CL:0000311!3.58e-09!6;CL:0000079!3.58e-09!6;CL:0000237!3.58e-09!6;CL:0000036!3.58e-09!6;CL:0000357!3.58e-09!6;CL:0000114!3.58e-09!6;CL:0000362!4.82e-09!8;CL:0000076!8.87e-09!62;CL:0000312!6.78e-08!5;CL:0002251!1.62e-07!21;CL:0000622!9.05e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.66e-16;42!CL:0002159;2.42e-16;14!CL:0002368;5.18e-12;13!CL:0000240;2.28e-11;6!CL:0000311;2.28e-11;6!CL:0000079;2.28e-11;6!CL:0000237;2.28e-11;6!CL:0000362;6.11e-10;9!CL:0000312;9.67e-10;5!CL:0002251;3.35e-09;20!CL:0000349;2.93e-08;19!CL:0002327;6.28e-08;4!CL:0002202;1.71e-07;9!CL:0002632;1.71e-07;9!CL:0002077;7.33e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.07e-30,253;CL:0002076,8.37e-22,42;CL:0002159,1.90e-16,14;CL:0000223,3.11e-16,58;CL:0002368,5.46e-12,13;CL:0000240,2.21e-11,6;CL:0000311,2.21e-11,6;CL:0000079,2.21e-11,6;CL:0000237,2.21e-11,6;CL:0000036,2.21e-11,6;CL:0000357,2.21e-11,6;CL:0000114,2.21e-11,6;CL:0000362,6.21e-10,9;CL:0000312,9.78e-10,5;CL:0002251,3.08e-09,20;CL:0000076,1.57e-08,63;CL:0000349,3.14e-08,19;CL:0002077,5.42e-08,34;CL:0002327,6.52e-08,4;CL:0002202,1.71e-07,9;CL:0002632,1.71e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;2.28e-11;6!CL:0000114;2.28e-11;6!CL:0000223;8.48e-09;58 | |||
|ontology_enrichment_disease=DOID:305!2.09e-21!106;DOID:0050687!3.70e-16!143;DOID:1749!7.51e-14!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.93e-15;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.52e-16,106;DOID:1749,2.83e-15,14;DOID:0050687,1.83e-12,143 | |||
|ontology_enrichment_uberon=UBERON:0001004!6.28e-23!72;UBERON:0000065!1.29e-15!53;UBERON:0004119!1.67e-15!169;UBERON:0000925!1.67e-15!169;UBERON:0006595!1.67e-15!169;UBERON:0000161!2.43e-13!35;UBERON:0000072!3.75e-13!46;UBERON:0008947!3.72e-12!38;UBERON:0003258!3.72e-12!38;UBERON:0000166!1.08e-11!21;UBERON:0005631!1.12e-11!14;UBERON:0000158!1.12e-11!14;UBERON:0000077!1.79e-11!130;UBERON:0004175!2.74e-10!25;UBERON:0000165!5.67e-10!28;UBERON:0000930!5.67e-10!28;UBERON:0000464!8.74e-10!104;UBERON:0001007!1.33e-09!155;UBERON:0001555!1.33e-09!155;UBERON:0007026!1.33e-09!155;UBERON:0005156!5.80e-09!59;UBERON:0000990!5.80e-09!59;UBERON:0003124!6.95e-09!7;UBERON:0001041!1.28e-08!98;UBERON:0001008!2.09e-08!45;UBERON:0005153!2.53e-08!37;UBERON:0004921!3.02e-08!129;UBERON:0004185!3.02e-08!129;UBERON:0001737!3.22e-08!9;UBERON:0003100!3.49e-08!41;UBERON:0001557!3.80e-08!19;UBERON:0006554!6.25e-08!44;UBERON:0003133!6.27e-08!48;UBERON:0003975!8.26e-08!22;UBERON:0005795!8.59e-08!22;UBERON:0003102!8.67e-08!95;UBERON:0000995!3.02e-07!21;UBERON:0001044!3.48e-07!6;UBERON:0003293!3.48e-07!6;UBERON:0003294!3.48e-07!6;UBERON:0010047!3.48e-07!6;UBERON:0000167!3.48e-07!6;UBERON:0005178!4.61e-07!34;UBERON:0002224!4.61e-07!34;UBERON:0005157!7.01e-07!51;UBERON:0003729!7.24e-07!5;UBERON:0005181!9.98e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0000161;2.65e-11;19!UBERON:0000166;2.65e-11;19!UBERON:0000165;8.88e-11;28!UBERON:0005631;4.17e-10;10!UBERON:0000158;4.17e-10;10!UBERON:0001004;3.58e-09;65!UBERON:0000065;5.41e-09;44!UBERON:0000478;9.60e-09;24!UBERON:0001911;6.28e-08;4!UBERON:0000072;3.37e-07;37!UBERON:0004175;4.06e-07;21!UBERON:0000002;5.16e-07;6!UBERON:0001560;5.16e-07;6!UBERON:0003729;5.79e-07;13!UBERON:0001003;6.56e-07;15!UBERON:0007376;6.56e-07;15!UBERON:0004807;8.08e-07;22!UBERON:0003100;8.69e-07;41!UBERON:0003343;9.33e-07;4!UBERON:0004785;9.33e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,2.79e-19,74;UBERON:0005631,6.86e-15,14;UBERON:0000158,6.86e-15,14;UBERON:0004119,1.02e-13,160;UBERON:0000925,1.02e-13,160;UBERON:0006595,1.02e-13,160;UBERON:0000166,9.95e-13,22;UBERON:0000065,7.91e-12,54;UBERON:0003124,5.21e-11,7;UBERON:0004175,6.95e-11,25;UBERON:0000161,8.21e-11,36;UBERON:0000165,2.93e-10,29;UBERON:0000930,2.93e-10,29;UBERON:0003102,8.69e-10,99;UBERON:0000072,8.86e-10,47;UBERON:0000478,1.03e-08,24;UBERON:0003100,1.31e-08,41;UBERON:0000995,2.08e-08,21;UBERON:0008947,2.18e-08,38;UBERON:0003258,2.18e-08,38;UBERON:0000033,5.17e-08,56;UBERON:0005156,5.93e-08,59;UBERON:0000990,5.93e-08,59;UBERON:0001007,6.23e-08,145;UBERON:0001555,6.23e-08,145;UBERON:0007026,6.23e-08,145;UBERON:0001911,6.52e-08,4;UBERON:0005333,6.52e-08,4;UBERON:0008425,6.52e-08,4;UBERON:0005311,6.52e-08,4;UBERON:0005795,6.77e-08,22;UBERON:0003975,6.77e-08,22;UBERON:0001041,8.72e-08,87;UBERON:0005153,1.53e-07,37;UBERON:0000153,1.82e-07,62;UBERON:0007811,1.82e-07,62;UBERON:0003133,4.55e-07,48;UBERON:0005157,5.17e-07,47;UBERON:0003729,5.45e-07,13;UBERON:0000002,5.66e-07,6;UBERON:0001560,5.66e-07,6;UBERON:0001003,6.74e-07,15;UBERON:0007376,6.74e-07,15;UBERON:0007383,6.74e-07,15;UBERON:0003343,8.98e-07,4;UBERON:0004785,8.98e-07,4 | |||
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| ||
|short_description=p6@TFAP2A | |||
}} | }} |
Latest revision as of 13:07, 19 September 2015
Short description: | p6@TFAP2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TFAP2A_5end |
Coexpression cluster: | C4538_breast_placenta_malignant_choriocarcinoma_Sebocyte_glassy_lung |
Association with transcript: | 0bp_to_ENST00000464323, NM_001042425, uc003myt.2, uc011dii.1_5end |
EntrezGene: | TFAP2A |
HGNC: | 11742 |
UniProt: | P05549Q5TAV5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.07e-30 | 253 |
endo-epithelial cell | 8.37e-22 | 42 |
general ecto-epithelial cell | 1.90e-16 | 14 |
endodermal cell | 3.11e-16 | 58 |
respiratory epithelial cell | 5.46e-12 | 13 |
stratified squamous epithelial cell | 2.21e-11 | 6 |
keratin accumulating cell | 2.21e-11 | 6 |
stratified epithelial cell | 2.21e-11 | 6 |
keratinizing barrier epithelial cell | 2.21e-11 | 6 |
epithelial fate stem cell | 2.21e-11 | 6 |
stratified epithelial stem cell | 2.21e-11 | 6 |
surface ectodermal cell | 2.21e-11 | 6 |
epidermal cell | 6.21e-10 | 9 |
keratinocyte | 9.78e-10 | 5 |
epithelial cell of alimentary canal | 3.08e-09 | 20 |
squamous epithelial cell | 1.57e-08 | 63 |
extraembryonic cell | 3.14e-08 | 19 |
ecto-epithelial cell | 5.42e-08 | 34 |
mammary gland epithelial cell | 6.52e-08 | 4 |
epithelial cell of tracheobronchial tree | 1.71e-07 | 9 |
epithelial cell of lower respiratory tract | 1.71e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.52e-16 | 106 |
squamous cell carcinoma | 2.83e-15 | 14 |
cell type cancer | 1.83e-12 | 143 |